View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20033_low_4 (Length: 526)
Name: NF20033_low_4
Description: NF20033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20033_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 510
Target Start/End: Original strand, 32946918 - 32947421
Alignment:
| Q |
12 |
aagcataggtgtgttattataaatgtttatgcaaaatgtgaatcgatggtcaagaggcggttgtgggagagactgttgttggctagaagaaatttgggga |
111 |
Q |
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| T |
32946918 |
aagcataggtgtgttattataaatgtttatgcaaaatgtgaatcggtggccaagaggcggttgtgggagagattgttgttggctagaagaaatttgggga |
32947017 |
T |
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| Q |
112 |
aggggcatggtgtgttcttggagattttaataccgtaagtagtagggaagaaagaagggggattcatgatgatgcgtccacaagtcaaattttagatatg |
211 |
Q |
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| T |
32947018 |
aggggcatggtgtgttcttggagattttaataccgtaagtagtagggaagaaagaagggggattcatgatgatgcgtccacaagtcaagttttagatatg |
32947117 |
T |
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| Q |
212 |
gatttcttcattagatttctaatgga-----agtggagttggaggatcaaatggtggcagggagaaggtttacttggtagcaccctaatggtcggtcaat |
306 |
Q |
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| T |
32947118 |
gatttcttcattagatttctaatcgaagtggagtggagttggaggatcaaatggtggcagggagaaggtttacttggtagcaccctaatggtcggtcaat |
32947217 |
T |
|
| Q |
307 |
gagccggattaatagagttttggtgtcggagaaatggaggcatttttggggggatgtgaatctttgggtccttccatgggacgtttctgatcattgtcct |
406 |
Q |
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| T |
32947218 |
gagccggattgatagagttttggtgtcgaaggaatggaggcatttttggggggatgtgaatctttgggtccttccatgggacgtttctgatcattgtcct |
32947317 |
T |
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| Q |
407 |
tttctcctaaaagtggaaggttgggattggggcccaaaaccgttctgttttaataatttttggttggataatggtgatattaagaaggtggtggaagaag |
506 |
Q |
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| T |
32947318 |
tttctcctaaaagtgaaaggttgggattggggcccaaaaccgttctgttttaataatttttggttggataatggtgatattaagaagatggtggaagaag |
32947417 |
T |
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| Q |
507 |
tttt |
510 |
Q |
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|||| |
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| T |
32947418 |
tttt |
32947421 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 474
Target Start/End: Complemental strand, 44516394 - 44516315
Alignment:
| Q |
395 |
gatcattgtccttttctcctaaaagtggaaggttgggattggggcccaaaaccgttctgttttaataatttttggttgga |
474 |
Q |
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|||||||| ||||| |||| ||||||| |||||||||||||| || ||||||||| | ||||| |||||||||||||| |
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| T |
44516394 |
gatcattgccctttggtccttaaagtgggtggttgggattgggggccgaaaccgttccgatttaacaatttttggttgga |
44516315 |
T |
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