View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20033_low_5 (Length: 447)
Name: NF20033_low_5
Description: NF20033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20033_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 28453671 - 28453261
Alignment:
| Q |
13 |
aatataaagaagcttcataagaagaattgctaataccgtgtttgggagcccaattgtaagctcttaatcaagcttgattgaggcatgtgtaaaagaatgg |
112 |
Q |
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| T |
28453671 |
aatataaagaagcttcataagaagaattgctaataccatgtttgggagcccaattgcaagctcttaatcaagcttgattgaggcatgtgta---gttttg |
28453575 |
T |
|
| Q |
113 |
tgctcggttgtttcaaattatgagaaaactgtattgagaaaaattacattaaacttatactagtagagccagaaaacaatgttgaatttcctggacatta |
212 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
28453574 |
tg------tgagaaaaattatgagaaaactgtattgagaaaaattacattaaacttatactagtagagccggaaaacaatgttgaatttcctgaacatta |
28453481 |
T |
|
| Q |
213 |
tacgcacaatttactatttttcgaaccaaaacggcgaccaagaatgaaattcaccagaaagaaagttttcattcagtcttaaactatataaactacatca |
312 |
Q |
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|| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28453480 |
tatgcgcaagttactatttttcgaaccaaaacggcgaccaagaatgaaattcaccagaaagaaagttttcattcagtcttaaactatataaactacatca |
28453381 |
T |
|
| Q |
313 |
accataccaccccaccagtgtattattgaaatccatataaaaggatatgacctgcaaagagacaaaaacaaatgaattatcaaaatgggtattttttaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28453380 |
accataccaccccaccagtgtattattgaaatccatataaaaggatatgacctgcaaagagacaaaaacaaatgaattgtcaaaatgggtattttttaat |
28453281 |
T |
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| Q |
413 |
ctcataaaagacaactattt |
432 |
Q |
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|||||||||||||||||||| |
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| T |
28453280 |
ctcataaaagacaactattt |
28453261 |
T |
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