View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20033_low_6 (Length: 376)
Name: NF20033_low_6
Description: NF20033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20033_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 44991943 - 44992291
Alignment:
| Q |
12 |
agagaggggtcgaagagaacagggaaggagaggaagataggaatggaatgccaaagttgtccctatgttttaaagtcaaaattacttatttgcccatggt |
111 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44991943 |
agagaggggtcgaagagagcagagaaggagaggaagataggaatggaatgccaaagttgtccctatgttttaaagtcaaaattacttatttgctcatggt |
44992042 |
T |
|
| Q |
112 |
gccctgtatttgtcaaaaaacatgttcatttatgttaaatgaattctctgaatgagtttaattcagttgataaagacgatgtattgtactccatccagtc |
211 |
Q |
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| T |
44992043 |
gtccagtatttgtcaaaaaacatgttcatctatgttaaatgaattctccgtatgagtttaattcagttgacaaagacgatgtattgtactccatccaatc |
44992142 |
T |
|
| Q |
212 |
ctatttatcttcattttaaaatgaaatattgaataaaaccaactacaatatttttaagaaaatactttgtatctcagaaaataagaaacttaacattaaa |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44992143 |
ctatttatcctcattttaaaatgaaatattgaataaaaccaactacaatatttttaagaaaatactttgtatctcagaaaataagaaacttaacattaaa |
44992242 |
T |
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| Q |
312 |
ataaaattttattattaaccataaagnnnnnnnctctatcaaattcttg |
360 |
Q |
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| T |
44992243 |
ataaaattttattattaaccataaagaaaaaaactctatcaaattcttg |
44992291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 39444119 - 39444019
Alignment:
| Q |
12 |
agagaggggtcgaagagaacagggaaggagaggaagataggaatggaatgccaaagttgtccctatgttttaaagtcaaaattacttatttgcccatggt |
111 |
Q |
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| T |
39444119 |
agagaggggccgcagagaatatggaaggagaggaggatgggaatggaatgacacaattgtccctatgttttaaagtcaaaattacttatttgtccatggt |
39444020 |
T |
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| Q |
112 |
g |
112 |
Q |
| |
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| |
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| T |
39444019 |
g |
39444019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 39608960 - 39608853
Alignment:
| Q |
25 |
agagaacagggaaggagaggaagataggaatggaatgccaaagttgtccctatgttttaaagtcaaaattacttatttgcccatggtgccctgtatttgt |
124 |
Q |
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|||||| ||||| | ||| |||||| || ||||||| |||| ||||||||||||||| || |||||||| |||||||||||||||| | | ||| ||| |
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| T |
39608960 |
agagaatagggaggaagaagaagatggggatggaattacaaaattgtccctatgttttttagacaaaattatttatttgcccatggtgtcttttatgtgt |
39608861 |
T |
|
| Q |
125 |
caaaaaac |
132 |
Q |
| |
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|||||||| |
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| T |
39608860 |
caaaaaac |
39608853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 3348721 - 3348609
Alignment:
| Q |
19 |
ggtcgaagagaacagggaaggagaggaagataggaatggaatgccaaagttgtccctatgttttaaagtcaaaattacttatttgcccatggtgccctgt |
118 |
Q |
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||||| |||||| ||||| | |||||| ||| ||||| ||||| |||| |||||| ||| ||||||| | |||||||||| ||||||||||| | || |
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| T |
3348721 |
ggtcgcagagaatagggacgaagaggaggatgggaatagaatgacaaaattgtccttatattttaaatccgaaattacttaactgcccatggtgtctagt |
3348622 |
T |
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| Q |
119 |
atttgtcaaaaaa |
131 |
Q |
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||||||| ||||| |
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| T |
3348621 |
atttgtccaaaaa |
3348609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 39071566 - 39071454
Alignment:
| Q |
19 |
ggtcgaagagaacagggaaggagaggaagataggaatggaatgccaaagttgtccctatgttttaaagtcaaaattacttatttgcccatggtgccctgt |
118 |
Q |
| |
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||||| ||| || ||||||| |||||| ||| ||||| ||||| |||| |||||| | | ||||||| | |||||||||| ||||||||||| | || |
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| T |
39071566 |
ggtcgcagaaaatagggaagaagaggaggatgggaatagaatgacaaaattgtccttgtattttaaatccgaaattacttaactgcccatggtgtctagt |
39071467 |
T |
|
| Q |
119 |
atttgtcaaaaaa |
131 |
Q |
| |
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||||||| ||||| |
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| T |
39071466 |
atttgtccaaaaa |
39071454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 11304034 - 11303939
Alignment:
| Q |
16 |
aggggtcgaagagaacagggaaggagaggaagataggaatggaatgccaaagttgtccctatgttttaaagtc-aaaattacttatttgcccatggt |
111 |
Q |
| |
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||||||| |||||||| ||||| ||||| ||| ||| ||||||| |||| ||||||||| ||||||| || ||||||||||| ||||||||||| |
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| T |
11304034 |
aggggtcatagagaacaaggaagaggaggaggatggga-tggaatgacaaaactgtccctatcttttaaaatctaaaattacttaattgcccatggt |
11303939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 6143137 - 6143025
Alignment:
| Q |
19 |
ggtcgaagagaacagggaaggagaggaagataggaatggaatgccaaagttgtccctatgttttaaagtcaaaattacttatttgcccatggtgccctgt |
118 |
Q |
| |
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||||| ||| || ||||||| |||||| ||| ||||| ||||| |||| |||||| | | ||||||| | |||||||||| ||||||||||| | || |
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| T |
6143137 |
ggtcgcagaaaatagggaagaagaggaggatgggaatagaatgacaaaattgtccttgtattttaaatccgaaattacttaactgcccatggtgtctagt |
6143038 |
T |
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| Q |
119 |
atttgtcaaaaaa |
131 |
Q |
| |
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||||||| ||||| |
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| T |
6143037 |
atttgtccaaaaa |
6143025 |
T |
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