View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20033_low_7 (Length: 373)

Name: NF20033_low_7
Description: NF20033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20033_low_7
NF20033_low_7
[»] chr4 (2 HSPs)
chr4 (1-155)||(19021370-19021524)
chr4 (239-359)||(19021608-19021728)
[»] chr6 (3 HSPs)
chr6 (278-356)||(10801058-10801136)
chr6 (239-356)||(4020678-4020792)
chr6 (239-356)||(34654916-34655030)
[»] chr7 (2 HSPs)
chr7 (239-356)||(5050354-5050468)
chr7 (239-356)||(48347539-48347653)
[»] chr5 (2 HSPs)
chr5 (239-356)||(29980021-29980135)
chr5 (239-356)||(2965993-2966107)
[»] chr3 (3 HSPs)
chr3 (239-356)||(9570992-9571106)
chr3 (299-356)||(12831868-12831925)
chr3 (301-356)||(4503195-4503250)
[»] chr2 (2 HSPs)
chr2 (239-356)||(34835254-34835368)
chr2 (239-356)||(2163694-2163808)
[»] chr1 (1 HSPs)
chr1 (239-356)||(39053780-39053894)
[»] scaffold0045 (1 HSPs)
scaffold0045 (299-356)||(3248-3305)
[»] scaffold0012 (1 HSPs)
scaffold0012 (275-356)||(205684-205765)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 19021370 - 19021524
Alignment:
Q  1 tatgaaatcacaccgttggtggggacttgtctttaaaatattagaaattgtttcaatttttattgttttgaatatctgtatatatttttctctattatgc 100  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19021370 tatgaaatggcaccgttggtggggacttgtctttaaaatattagaaattgtttcaatttttattgttttgaatatctgtatatatttttctctattatgc 19021469  T
Q  101 ttaattcgtcagtcgaggcttgttctcccatcaaacatgtccgaacctgtaaata 155  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  19021470 ttaattcgtcagtcgatgcttgttctcccatcgaacaagtccgaacctgtaaata 19021524  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 239 - 359
Target Start/End: Original strand, 19021608 - 19021728
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  19021608 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactctatgtgactatgaatca 19021707  T
Q  339 tatcaacaatatcaacaaagt 359  Q
    |||||||||||||||||||||    
T  19021708 tatcaacaatatcaacaaagt 19021728  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 10801058 - 10801136
Alignment:
Q  278 aaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatcatatcaacaatatcaacaa 356  Q
    |||||||| ||||  ||||  |||||||||||| ||||| |||||||  || |||||||||||||||||||||||||||    
T  10801058 aaacgaaatcatggctgatcatggttataacaacttctacactccattcgagtatgaatcatatcaacaatatcaacaa 10801136  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 4020678 - 4020792
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| |||| ||||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  4020678 ttcttgttagttatatccgtttcagattctctacat---aaatgaaatcatggctgatcatggttataacaacttctacactccactggaatatgaatca 4020774  T
Q  339 tatcaacaatatcaacaa 356  Q
    |||||||| |||||||||    
T  4020775 tatcaacagtatcaacaa 4020792  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 34655030 - 34654916
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| |||| ||||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  34655030 ttcttgttagttatatccgtttcagattctctacat---aaatgaaatcatggctgatcatggttataacaacttctacactccactggaatatgaatca 34654934  T
Q  339 tatcaacaatatcaacaa 356  Q
    |||||||| |||||||||    
T  34654933 tatcaacagtatcaacaa 34654916  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 5050354 - 5050468
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| |||| ||||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  5050354 ttcttgttagttatatccgtttcagattctctacat---aaatgaaatcatggctgatcatggttataacaacttctacactccactggaatatgaatca 5050450  T
Q  339 tatcaacaatatcaacaa 356  Q
    |||||||| |||||||||    
T  5050451 tatcaacagtatcaacaa 5050468  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 48347539 - 48347653
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| | || ||||  ||||  |||||||||||| ||||| |||||||  || |||||||||    
T  48347539 ttcttgttagttatatccgtttcagattctctacat---aaatgcaatcatggctgatcatggttataacaacttctacactccattggagtatgaatca 48347635  T
Q  339 tatcaacaatatcaacaa 356  Q
    |||||||| |||||||||    
T  48347636 tatcaacagtatcaacaa 48347653  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 29980135 - 29980021
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| | || ||||  ||||  |||||||||||| ||||| |||||||  || |||||||||    
T  29980135 ttcttgttagttatatccgtttcagattctctacat---aaatgcaatcatggctgatcatggttataacaacttctacactccattggagtatgaatca 29980039  T
Q  339 tatcaacaatatcaacaa 356  Q
    |||||||| |||||||||    
T  29980038 tatcaacagtatcaacaa 29980021  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 2966107 - 2965993
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| | || ||||  ||||  |||||||||||| ||||| ||| |||  || |||||||||    
T  2966107 ttcttgttagttatatccgtttcagattctctacat---aaatgcaatcatggctgatcatggttataacaacttctacactgcattggagtatgaatca 2966011  T
Q  339 tatcaacaatatcaacaa 356  Q
    |||||||| |||||||||    
T  2966010 tatcaacagtatcaacaa 2965993  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 9570992 - 9571106
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| |||| ||||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  9570992 ttcttgttagttatatccgtttcagattctctacat---aaatgaaatcatggctgatcatggttataacaacttctacactccactggaatatgaatca 9571088  T
Q  339 tatcaacaatatcaacaa 356  Q
    |||||||| |||||||||    
T  9571089 tatcaacagtatcaacaa 9571106  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 12831925 - 12831868
Alignment:
Q  299 tggttataacaatttctatactccatatgactatgaatcatatcaacaatatcaacaa 356  Q
    |||||||||||| || |||| ||||||||| ||||||||||||| ||| |||||||||    
T  12831925 tggttataacaacttttatattccatatgagtatgaatcatatccacattatcaacaa 12831868  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 4503250 - 4503195
Alignment:
Q  301 gttataacaatttctatactccatatgactatgaatcatatcaacaatatcaacaa 356  Q
    |||||||||| ||||| |||||||  || ||||||||||||||||| |||||||||    
T  4503250 gttataacaacttctacactccattcgagtatgaatcatatcaacagtatcaacaa 4503195  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 34835254 - 34835368
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| |||| ||||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  34835254 ttcttgttagttatatccgtttcagattctctacat---aaatgaaatcatggctgatcatggttataacaacttctacactccactggaatatgaatca 34835350  T
Q  339 tatcaacaatatcaacaa 356  Q
    |||||||| |||||||||    
T  34835351 tatcaacagtatcaacaa 34835368  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 2163808 - 2163694
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| ||||  |||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  2163808 ttcttgttagttatatccgtttcagattctctacat---aaatgaaattatggttgatcatggttataacaacttctacactccactggaatatgaatca 2163712  T
Q  339 tatcaacaatatcaacaa 356  Q
    |||||||| |||||||||    
T  2163711 tatcaacagtatcaacaa 2163694  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 39053780 - 39053894
Alignment:
Q  239 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 338  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| | || ||||  ||||  |||||||||||| ||||| |||||||  || |||||||||    
T  39053780 ttcttgttagttatatccgtttcagattctctacat---aaatgcaatcatggctgatcatggttataacaacttctacactccattggagtatgaatca 39053876  T
Q  339 tatcaacaatatcaacaa 356  Q
    |||||||| |||||||||    
T  39053877 tatcaacagtatcaacaa 39053894  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 3248 - 3305
Alignment:
Q  299 tggttataacaatttctatactccatatgactatgaatcatatcaacaatatcaacaa 356  Q
    |||||||||||| ||||| |||||||  || ||||||||||||||| | |||||||||    
T  3248 tggttataacaacttctacactccattggagtatgaatcatatcaatagtatcaacaa 3305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 205765 - 205684
Alignment:
Q  275 cataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatcatatcaacaatatcaacaa 356  Q
    ||||||||||| |||| |||||  |||||| ||||| ||||| |||||||   | ||||| ||||||||||| |||||||||    
T  205765 cataaacgaaatcatggatgatcatggttagaacaacttctacactccattcaagtatgagtcatatcaacagtatcaacaa 205684  T

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