View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20033_low_8 (Length: 365)
Name: NF20033_low_8
Description: NF20033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20033_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 46833683 - 46833930
Alignment:
| Q |
1 |
ggagattttagggatgcttgatcatccttttttacctactttgtatactgattttgatgcttctcattactcttgtttggttatggagttttgtcctggt |
100 |
Q |
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| T |
46833683 |
ggagattttagggatgcttgatcatccttttttacctactttgtatactgattttgatgcttctcattactcttgtttggttatggagttttgtcctggt |
46833782 |
T |
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| Q |
101 |
ggtgatttgtatgcttgtcgccaacgccagcctgggaagcgcttttcattatcatcctctaagtaagttca-------ttttttatttactcaaacctta |
193 |
Q |
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| T |
46833783 |
ggtgatttgtatgcttgtcgccaacgccagcctgggaagcgcttttcattatcatcctctaagtaagttcatttttttttttttttttactcaaacctta |
46833882 |
T |
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| Q |
194 |
tacatgtccattcttcatatacaagagattaatattatatacgtttgg |
241 |
Q |
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| T |
46833883 |
tacattttcattcttcatatacaagagattaatattatatacgtttgg |
46833930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 46833994 - 46834037
Alignment:
| Q |
305 |
gtcaaagcttttccttcatataatctataaactgtttttgatat |
348 |
Q |
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| T |
46833994 |
gtcaaagtttttccttcatataatctataaactgtttttgatat |
46834037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 6073458 - 6073362
Alignment:
| Q |
13 |
gatgcttgatcatccttttttacctactttgtatactgattttgatgcttctcattactcttgtttggttatggagttttgtcctggtggtgatttg |
109 |
Q |
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| T |
6073458 |
gatgcttgatcatccttttcttcctagtctctatgctgagtttgaagcttctcatttctcttgcattgttatggagttttgttccggtggagatttg |
6073362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 37170315 - 37170406
Alignment:
| Q |
14 |
atgcttgatcatccttttttacctactttgtatactgattttgatgcttctcattactcttgtttggttatggagttttgtcctggtggtga |
105 |
Q |
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| T |
37170315 |
atgcttgatcatccttttcttcctacactctacgctgagtttgaagcttctcatttctcttgcattgttatggagttttgttccggtggtga |
37170406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 12235276 - 12235244
Alignment:
| Q |
70 |
ctcttgtttggttatggagttttgtcctggtgg |
102 |
Q |
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| T |
12235276 |
ctcttgcttggttatggagttttgtcctggtgg |
12235244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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