View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20033_low_9 (Length: 305)
Name: NF20033_low_9
Description: NF20033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20033_low_9 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 42855511 - 42855219
Alignment:
| Q |
13 |
aatatgcagaaacagaaaataagagtaatgcgttacaccacaccttggttcttacatcgttgtgggctttggaaattccaagcatagttgctcgtcggag |
112 |
Q |
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| T |
42855511 |
aatatgcagaaacagaaaataagagtaatgcgttacaccacaccttggtgcttacatcgttgtgggctttggaacttccaagcatagttgctcgtcggag |
42855412 |
T |
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| Q |
113 |
gaaaatggataaatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacacaataatagtctttgaaattaa |
212 |
Q |
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| T |
42855411 |
gaaaatggataaatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacacaataatagtctttgaaattaa |
42855312 |
T |
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| Q |
213 |
ggaggaagaagtttgaaagcaccttgtaatttattacttctagaaacataaatctgagtattagaaaatttaaattaaggaagacttaaatcc |
305 |
Q |
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| T |
42855311 |
ggaggaagaagtttgaaagcaccttgtaatttattacttctagaaacataaatctgagtattagaaaatttaaattaaggaagacttaaatcc |
42855219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 42857104 - 42856895
Alignment:
| Q |
13 |
aatatgcagaaacagaaaataagagtaatgcgttacaccacaccttggttcttacatcgttgtgggctttggaaattccaagcatagttgctcgtcggag |
112 |
Q |
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|||||||||||||||||||||||||| ||| |||||| ||||||||||| |||||| ||||| ||||||||| ||||| ||||||||||| ||||||| |
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| T |
42857104 |
aatatgcagaaacagaaaataagagtgatgtgttacaacacaccttggtgcttacagttttgtgagctttggaacttccatgcatagttgcttgtcggag |
42857005 |
T |
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| Q |
113 |
gaaaatggataaatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacacaataatagtctttgaaattaa |
212 |
Q |
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| T |
42857004 |
gaaattagataaacgactctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtcaacacaataacagtctttgaatttaa |
42856905 |
T |
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| Q |
213 |
ggaggaagaa |
222 |
Q |
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|||||||||| |
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| T |
42856904 |
ggaggaagaa |
42856895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 267
Target Start/End: Complemental strand, 42861100 - 42860928
Alignment:
| Q |
94 |
gcatagttgctcgtcggaggaaaatggataaatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacacaa |
193 |
Q |
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||||||||||| ||||||||||| | |||||| |||||||||||||| |||| |||||||||| | ||| || || |||||||||||| ||||||||| |
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| T |
42861100 |
gcatagttgcttgtcggaggaaattagataaacgactctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtcaacacaa |
42861001 |
T |
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| Q |
194 |
taatagtctttgaaattaaggaggaagaa---gtttgaaagcaccttgtaatttattacttctagaaacataaatct |
267 |
Q |
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||| |||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |||| ||||||||| |
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| T |
42861000 |
taacagtctttgaatttaaggaggaagaacatgtttgaagacaccttg----ttattacttccagaatcataaatct |
42860928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 42853458 - 42853362
Alignment:
| Q |
95 |
catagttgctcgtcggaggaaaatggataaatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacac |
191 |
Q |
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| T |
42853458 |
catagctgcttgtcggaggaaattagttaaacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacac |
42853362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 27605 - 27482
Alignment:
| Q |
95 |
catagttgctcgtcggaggaaaatggataaatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacacaat |
194 |
Q |
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|||||||||| |||||||||||| |||||| || ||||||||| |||| ||||||| |||| ||| || || |||||||||||| |||||||||| |
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| T |
27605 |
catagttgcttgtcggaggaaaagagataaacgagcctctagtgtttccaagttcatgtactcctcctaaaagacaagtcgaaaacattgtcaacacaat |
27506 |
T |
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| Q |
195 |
aatagtctttgaaattaaggaggaag |
220 |
Q |
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| T |
27505 |
a--agtctttgaaattaaggaggaag |
27482 |
T |
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