View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20034_high_11 (Length: 335)

Name: NF20034_high_11
Description: NF20034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20034_high_11
NF20034_high_11
[»] chr4 (7 HSPs)
chr4 (3-324)||(4469139-4469460)
chr4 (66-168)||(11307292-11307396)
chr4 (97-153)||(47680706-47680762)
chr4 (56-136)||(11307613-11307695)
chr4 (97-136)||(51681335-51681374)
chr4 (102-153)||(56160770-56160821)
chr4 (97-153)||(8445940-8445996)
[»] chr8 (6 HSPs)
chr8 (61-154)||(5981458-5981553)
chr8 (57-138)||(1409220-1409301)
chr8 (92-168)||(36046842-36046918)
chr8 (97-154)||(5981750-5981807)
chr8 (89-125)||(13758985-13759021)
chr8 (89-125)||(23140563-23140599)
[»] chr6 (3 HSPs)
chr6 (57-168)||(7301585-7301699)
chr6 (97-137)||(22612271-22612311)
chr6 (89-125)||(11554343-11554379)
[»] chr3 (3 HSPs)
chr3 (97-171)||(51677597-51677671)
chr3 (99-154)||(53981614-53981669)
chr3 (97-154)||(32201124-32201181)
[»] chr1 (2 HSPs)
chr1 (56-155)||(43834537-43834638)
chr1 (97-143)||(26231682-26231728)
[»] chr5 (1 HSPs)
chr5 (117-154)||(30886438-30886475)
[»] chr2 (3 HSPs)
chr2 (56-168)||(19548186-19548299)
chr2 (98-152)||(19547956-19548010)
chr2 (89-125)||(41752933-41752969)
[»] scaffold0548 (1 HSPs)
scaffold0548 (57-136)||(4102-4183)
[»] chr7 (1 HSPs)
chr7 (89-125)||(4109583-4109619)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 4469139 - 4469460
Alignment:
Q  3 ttggatatataagagatgggacgatggtacaagtataagtgatgtgtcttgaagaaatgttgtatatataagagaggggacacacgcctaatatcttaag 102  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  4469139 ttggatatataagagatgggacgacggtacaagtataagtgatgtgccttgaagaaatgttgtatatataagagaggggacacacgtctaatgtcttaag 4469238  T
Q  103 gttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtcgctcctgaaactttccaacatcactaaatcgattcaaaa 202  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  4469239 gttttgggtgaaaatgtgatgtctgagtctcttaattgtcctagacgtttagtatattgtcgctccccagactttccaacatcactaaatcgattcaaaa 4469338  T
Q  203 tcacaaaatgggtgtatgaaccatccaattttaatccaaagactccaatatatcaaccacattgacagatccaaattcatataaaaacatcactatgaat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4469339 tcacaaaatgggtgtatgaaccatccaattttaatccaaagactccaatatatcaaccacattgacagatccatattcatataaaaacatcactatgaat 4469438  T
Q  303 ctaagctaactgtgtttctctg 324  Q
    ||||||||||||||||||||||    
T  4469439 ctaagctaactgtgtttctctg 4469460  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 11307396 - 11307292
Alignment:
Q  66 atatataagagaggggacac--acgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtc 163  Q
    ||||||||||||||||||||  |  ||| ||  ||||| |||||||||| | ||||||||||||||||||||||| |||||  || |||||  |||||||    
T  11307396 atatataagagaggggacacgtatacctgatgccttaatgttttgggtggagatgtggtgtctaagtctcttagtggtcctgaacatttagcttattgtc 11307297  T
Q  164 gctcc 168  Q
    |||||    
T  11307296 gctcc 11307292  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 47680706 - 47680762
Alignment:
Q  97 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 153  Q
    |||||||||||||||| | ||||||||||||||||||||| | ||||| ||||||||    
T  47680706 cttaaggttttgggtggagatgtggtgtctaagtctcttattggtcctggacgttta 47680762  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 11307695 - 11307613
Alignment:
Q  56 gaaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctctta 136  Q
    ||||||||| |||||| ||||||||||||||    ||| || |||||| |||||||||| | ||||||||||||||| |||||    
T  11307695 gaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtctaagtgtctta 11307613  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 51681335 - 51681374
Alignment:
Q  97 cttaaggttttgggtgaaaatgtggtgtctaagtctctta 136  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  51681335 cttaaggttttgggtggagatgtggtgtctaagtctctta 51681374  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 56160770 - 56160821
Alignment:
Q  102 ggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 153  Q
    ||||||||||| |||| |||||||||||||||||||| ||| |||| |||||    
T  56160770 ggttttgggtggaaatatggtgtctaagtctcttagtggtcttagatgttta 56160821  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 8445940 - 8445996
Alignment:
Q  97 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 153  Q
    ||||||||||| |||| | |||||| |||||||||||||| ||||||| || |||||    
T  8445940 cttaaggttttaggtggagatgtggcgtctaagtctcttatttgtcctggaagttta 8445996  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 5981553 - 5981458
Alignment:
Q  61 gttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 154  Q
    |||| |||||||||||||||||| || |  ||| ||  |||||||||||||||| ||||||||||||||||||||||| | || || |||||||||    
T  5981553 gttggatatataagagaggggacccatgtacctgatgccttaaggttttgggtggaaatgtggtgtctaagtctcttattggttctggacgtttag 5981458  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 1409220 - 1409301
Alignment:
Q  57 aaatgttgtatatataagagaggggacacacgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagt 138  Q
    |||||||| ||||||||| |||||||  ||   ||||| ||||||| |||||| |||||||||||||||||||| |||||||    
T  1409220 aaatgttggatatataagggaggggatccatagctaatttcttaagattttggatgaaaatgtggtgtctaagtttcttagt 1409301  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 36046918 - 36046842
Alignment:
Q  92 aatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtcgctcc 168  Q
    ||||||||||| |||| | |||| ||||||| ||||||| | |||||  ||||||||||||||| ||||||||||||    
T  36046918 aatatcttaagattttagatgaagatgtggtatctaagttttttagtgatcctagacgtttagtctattgtcgctcc 36046842  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 5981807 - 5981750
Alignment:
Q  97 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 154  Q
    |||||||||||||||| | ||||||||||||||||||||| | ||||| || ||||||    
T  5981807 cttaaggttttgggtggagatgtggtgtctaagtctcttactggtccttgaagtttag 5981750  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 13758985 - 13759021
Alignment:
Q  89 cctaatatcttaaggttttgggtgaaaatgtggtgtc 125  Q
    |||||| |||||||||||||||| |||||||||||||    
T  13758985 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 13759021  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 23140599 - 23140563
Alignment:
Q  89 cctaatatcttaaggttttgggtgaaaatgtggtgtc 125  Q
    |||||| |||||||||||||||| |||||||||||||    
T  23140599 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 23140563  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 7301699 - 7301585
Alignment:
Q  57 aaatgttgtatatataagagaggggacacacg--cctaatatcttaaggtttt-gggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 153  Q
    |||||||  |||||||| ||||||||||||    ||||||||||||||||||| |||| | | | |||||||||||||||||||| |||||||| |||||    
T  7301699 aaatgttagatatataaaagaggggacacatatacctaatatcttaaggtttttgggtaagagtttggtgtctaagtctcttagtggtcctagaggttta 7301600  T
Q  154 gtatattgtcgctcc 168  Q
    |   |||||||||||    
T  7301599 gcccattgtcgctcc 7301585  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 22612311 - 22612271
Alignment:
Q  97 cttaaggttttgggtgaaaatgtggtgtctaagtctcttag 137  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  22612311 cttaaggttttgggtgtagatgtggtgtctaagtctcttag 22612271  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 11554379 - 11554343
Alignment:
Q  89 cctaatatcttaaggttttgggtgaaaatgtggtgtc 125  Q
    |||||| |||||||||||||||| |||||||||||||    
T  11554379 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 11554343  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 51677597 - 51677671
Alignment:
Q  97 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtcgctcctga 171  Q
    ||||||||||| | || | ||||| ||||||||||||||||| ||||||||||||||| | ||||| ||||||||    
T  51677597 cttaaggtttttgatggagatgtgatgtctaagtctcttagtagtcctagacgtttagcacattgttgctcctga 51677671  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 53981614 - 53981669
Alignment:
Q  99 taaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 154  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||| | |||||||||    
T  53981614 taaggttttgggtggagatgtggtgtctaagtcttttagtggtcttggacgtttag 53981669  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 32201124 - 32201181
Alignment:
Q  97 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 154  Q
    |||||| ||||||||| | ||||||||||||||| ||||||| |||||  ||||||||    
T  32201124 cttaagattttgggtggagatgtggtgtctaagtttcttagtggtcctgaacgtttag 32201181  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 43834537 - 43834638
Alignment:
Q  56 gaaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 153  Q
    ||||||||| |||||||||||||||||| ||    |||||| |||||||||||| | || | |||||| |||||||||||||  | ||||||||||||||    
T  43834537 gaaatgttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgtggcgtctaagtctcttgatggtcctagacgttta 43834636  T
Q  154 gt 155  Q
    ||    
T  43834637 gt 43834638  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 26231728 - 26231682
Alignment:
Q  97 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcc 143  Q
    |||||||||||||||| | |||||||||| |||||||||||| ||||    
T  26231728 cttaaggttttgggtggagatgtggtgtccaagtctcttagtggtcc 26231682  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 30886475 - 30886438
Alignment:
Q  117 tgtggtgtctaagtctcttagttgtcctagacgtttag 154  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30886475 tgtggtgtctaagtctcttagtggtcctagacgtttag 30886438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 19548186 - 19548299
Alignment:
Q  56 gaaatgttgtatatataagagaggggacacacgc--ctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 153  Q
    ||||||||| |||||||||||||| ||| ||     ||||| ||||||||||||||||| | ||||||||| |||||||||| |  ||||||||| ||||    
T  19548186 gaaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgtataagtctctttg-ggtcctagacattta 19548284  T
Q  154 gtatattgtcgctcc 168  Q
    | | ||||| |||||    
T  19548285 gcacattgttgctcc 19548299  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 19547956 - 19548010
Alignment:
Q  98 ttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttt 152  Q
    ||||||||||| ||| ||||||||||||||| | ||||||| ||||| |||||||    
T  19547956 ttaaggttttgtgtggaaatgtggtgtctaaatatcttagtggtcctggacgttt 19548010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 41752969 - 41752933
Alignment:
Q  89 cctaatatcttaaggttttgggtgaaaatgtggtgtc 125  Q
    |||||| |||||||||||||||| |||||||||||||    
T  41752969 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 41752933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 4183 - 4102
Alignment:
Q  57 aaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctctta 136  Q
    |||||||| |||||| ||||||||||||||    ||| || |||||| |||||||||| | ||||||||||||||| |||||    
T  4183 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtctaagtgtctta 4102  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 4109619 - 4109583
Alignment:
Q  89 cctaatatcttaaggttttgggtgaaaatgtggtgtc 125  Q
    |||||| | ||||||||||||||||||||||||||||    
T  4109619 cctaatgttttaaggttttgggtgaaaatgtggtgtc 4109583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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