View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20034_high_2 (Length: 442)
Name: NF20034_high_2
Description: NF20034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20034_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 28987955 - 28988356
Alignment:
| Q |
15 |
aacctgtgtcagcgtgtggttacattcaattacttccattttctgaaattagtagctgtgtcagtgtcagtgtagtatcataggtagtgagttgttacta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28987955 |
aacctgtgtcagcgtgtggttacattcaattacttccattttctaaaattagtagctgtgtcagtgtcagtgtt---tcataggtagtgagttgttacta |
28988051 |
T |
|
| Q |
115 |
gtaagttctgaagcacggacacctcttagattaggtgtttcctgtatccaaaacgcaccggtgtctgacactgacacaacacctacacataaatcacctg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28988052 |
gtaagttctgaagcacggacacctcttagattaggtgtttcctgtgtccaaaacgcaccggtgtctgacactgacacaacacctacacataaatcacctg |
28988151 |
T |
|
| Q |
215 |
tgtcgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtctaagttagaattttggagctttaaataattgtagtgtggtgggg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28988152 |
tgtcgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtataagttagaattttggagctttaaataattgtagtgtggtgggg |
28988251 |
T |
|
| Q |
315 |
gaaaaataccttttcttctttcttttctctgaggttgtgtacattgattatgttaatgatgcttccgggttctgattttgagccctgttattttgtggct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28988252 |
gaaaaataccttttcttctttcttttctctgaggttgtgtac---gattatgttaatgatgcttctgggttctgattttgagccctgttattttgtggct |
28988348 |
T |
|
| Q |
415 |
gatgatgt |
422 |
Q |
| |
|
|||||||| |
|
|
| T |
28988349 |
gatgatgt |
28988356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 2468485 - 2468521
Alignment:
| Q |
29 |
tgtggttacattcaattacttccattttctgaaatta |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2468485 |
tgtggttacattcaattacttccattttcttaaatta |
2468521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 27131685 - 27131721
Alignment:
| Q |
29 |
tgtggttacattcaattacttccattttctgaaatta |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27131685 |
tgtggttacattcaattacttccattttcttaaatta |
27131721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 9018882 - 9018918
Alignment:
| Q |
29 |
tgtggttacattcaattacttccattttctgaaatta |
65 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
9018882 |
tgtggttacattcaattactttcattttctcaaatta |
9018918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 44572654 - 44572683
Alignment:
| Q |
214 |
gtgtcgacgtatccgtgtcagtgtcgtgtc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44572654 |
gtgtcgacgtatccgtgtcagtgtcgtgtc |
44572683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 38685311 - 38685340
Alignment:
| Q |
29 |
tgtggttacattcaattacttccattttct |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38685311 |
tgtggttacattcaattacttccattttct |
38685340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University