View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20034_high_3 (Length: 417)
Name: NF20034_high_3
Description: NF20034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20034_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 69 - 329
Target Start/End: Original strand, 2018327 - 2018587
Alignment:
| Q |
69 |
gtctcgtccaaagattacggaattaacccttgcacaatattaaccctacaaaaataaaactagggttcacacttatacctcgctgtgaacaagaacaacc |
168 |
Q |
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| T |
2018327 |
gtctcgtccaaagattacggaattaacccttgcacactattaaccctacaaaaataaaactagggttcacacttatacctcgctgtgaacaagaacaacc |
2018426 |
T |
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| Q |
169 |
atggaatcactacctgacgacgttctgtatcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccac |
268 |
Q |
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| T |
2018427 |
atggaatcactacctgacgacgttctgtgtcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccac |
2018526 |
T |
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| Q |
269 |
tctggctctccctccgttccttcgaccttaatgacaactacttttccgacttccacaggtt |
329 |
Q |
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| T |
2018527 |
tctggctctccttccgttccttcgaccttgatgacaactacttttccgacttccacaggtt |
2018587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 2005585 - 2005700
Alignment:
| Q |
178 |
ctacctgacgacgttctgtatcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccactctggctct |
277 |
Q |
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| T |
2005585 |
ctacctgacgatcttcgatgtcacattctgtcatgccttccgacgagagatgcgtctgctactagccttctgtcaaagagatggaaaccactttggctct |
2005684 |
T |
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| Q |
278 |
ccctccgttccttcga |
293 |
Q |
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| T |
2005685 |
cactccgttccttcga |
2005700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 290
Target Start/End: Original strand, 2011762 - 2011871
Alignment:
| Q |
181 |
cctgacgacgttctgtatcacattctgtcgttccttccgacgagggatgctgttgctactagccttctgtcaaagagatggaaaccactctggctctccc |
280 |
Q |
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| T |
2011762 |
cctgacgatgttcggtgtcacattctctcattccttccaacgagagatgctgctgctacaagtcttctatcaaagagatggaaaccactttggctctcgc |
2011861 |
T |
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| Q |
281 |
tccgttcctt |
290 |
Q |
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| T |
2011862 |
tccgttcctt |
2011871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 388
Target Start/End: Complemental strand, 913263 - 913229
Alignment:
| Q |
354 |
caagaagaaaggcattgatgatagtatataacaac |
388 |
Q |
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| T |
913263 |
caagaagaaaggcattgatgatagtatataacaac |
913229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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