View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20034_high_4 (Length: 392)
Name: NF20034_high_4
Description: NF20034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20034_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 135 - 375
Target Start/End: Original strand, 34697071 - 34697312
Alignment:
| Q |
135 |
aacaaactgatttaaatcctagtttgaacaannnnnnnatcaaactatacttatgtgtcaaactctaaatttcctatagtcccttcttaaaaaacagaag |
234 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34697071 |
aacaaactgatttaaatcctagttttaacaatttttttatcaaactttacttatgtgtcaaactctaaattacctatagtcccttcttaaaaaacagaag |
34697170 |
T |
|
| Q |
235 |
gtttggacataatatatatcaatatttacatgtgtttgtgtgggcgcgtgtgcgcacacccagaatgt-acgcacggggtatggttatgttctataatat |
333 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
34697171 |
gtttggacaaaatatatatcaatatttacatgtgtttgtgtgggcgcccgtgcgcacacccagaatttaaagcacggggtatggttatgttctataatat |
34697270 |
T |
|
| Q |
334 |
ctcatggacgtgtgcaatgttcatggcttcatttggttgatg |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34697271 |
ctcatggacgtgtgcaatgttcatggcttcatttggttgatg |
34697312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 34695237 - 34695344
Alignment:
| Q |
30 |
ccattcctctttactggtggtcaatttcaaggtaataaatattcatttttataaagtgattgaacttaagtggtaaataatttcaattaaagatgaatat |
129 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34695237 |
ccattcctctttactggtgatcaatttcaaggtaataaatattaatttttataaagtgattgaacttaagtggtaaataatttcaattaaagatgaatat |
34695336 |
T |
|
| Q |
130 |
ttgaaaac |
137 |
Q |
| |
|
|||||||| |
|
|
| T |
34695337 |
ttgaaaac |
34695344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University