View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20034_high_7 (Length: 355)
Name: NF20034_high_7
Description: NF20034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20034_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 36465470 - 36465130
Alignment:
| Q |
1 |
gttcatgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaaagatcattatcaaggacttttatacttgtcacctcattgtat |
100 |
Q |
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| T |
36465470 |
gttcatgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaaagatcattatcaaggacttttatacttctcacctcattgtat |
36465371 |
T |
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| Q |
101 |
atgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtcttagtgtgtgtcctatttttaaagtatcatttcactattaaaat |
200 |
Q |
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| T |
36465370 |
atgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtcttagtgtgtgtcctatttttaaagtatcatttctctattaaaat |
36465271 |
T |
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| Q |
201 |
agataacatggatttttgtttgtttggtgaaggcatgattacaggtggagcaggagcaactgttttatacaacttgaggcaaagacatccaacacttgac |
300 |
Q |
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| T |
36465270 |
agataacatggatttttgtttgtttggtgaaggcatgattacaggtggagcaggagcaactgttttatacaacttgaggcaaagacacccaacacttgac |
36465171 |
T |
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| Q |
301 |
ctgcctgtgactgactatgatttagcacttctttttcaacc |
341 |
Q |
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| T |
36465170 |
ctgcctgtgattgactatgatttagcacttctttttcaacc |
36465130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 122 - 341
Target Start/End: Complemental strand, 36474548 - 36474308
Alignment:
| Q |
122 |
ctttctaaccaatataacacgtgctacatgttgtcttagtgt---gtgtcctattttt---aaagtatcatttcactattaaaatagataacatggatt- |
214 |
Q |
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| T |
36474548 |
ctttctaaccaatataacatgtgctatatgttgtcttagtgtttcttataatatttttgtcaaagtatcatttctctattaaaatacgtaatatggattg |
36474449 |
T |
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| Q |
215 |
------------tttgtttgtttg--gtgaaggcatgattacaggtggagcaggagcaactgttttatacaacttgaggcaaagacatccaacacttgac |
300 |
Q |
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| T |
36474448 |
aatgcatatgtgtttgtttgtttggtgtgaagtcatgattactggtggagcaggagcaactgttttatacaacttgaagaaaagacacccaacacttgac |
36474349 |
T |
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| Q |
301 |
ctgcctgtgactgactatgatttagcacttctttttcaacc |
341 |
Q |
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| T |
36474348 |
ctgcctgtgattgactatgatttagcacttcttttccaacc |
36474308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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