View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20034_high_9 (Length: 339)
Name: NF20034_high_9
Description: NF20034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20034_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 76 - 319
Target Start/End: Complemental strand, 25450871 - 25450628
Alignment:
| Q |
76 |
taacaaaggctaatatatttctgctgtattttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatttacataata |
175 |
Q |
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| T |
25450871 |
taacaaaggctaatatatttctgctatattttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatttacataata |
25450772 |
T |
|
| Q |
176 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcctaaacaataa |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25450771 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcctaaacaataa |
25450672 |
T |
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| Q |
276 |
tagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
319 |
Q |
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| T |
25450671 |
tagttatgcatgaattaagggaagtcaacagtgatgatgatgtc |
25450628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 76 - 319
Target Start/End: Complemental strand, 25446308 - 25446065
Alignment:
| Q |
76 |
taacaaaggctaatatatttctgctgtattttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatttacataata |
175 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25446308 |
taacaaaggctaatatatttctgctatattttacacacggttgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatttacataata |
25446209 |
T |
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| Q |
176 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcctaaacaataa |
275 |
Q |
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| T |
25446208 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacaattgatcctaaacaataa |
25446109 |
T |
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| Q |
276 |
tagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
319 |
Q |
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| T |
25446108 |
tagttatgcatgaattaagggaagtcaacagtgatgatgatgtc |
25446065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 69 - 319
Target Start/End: Original strand, 2606833 - 2607085
Alignment:
| Q |
69 |
tataaaataacaaaggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatt |
166 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2606833 |
tataaaataacaaaggctaatatatttctgctatatattttacacatggctgtacaaggctttatagatgtccaagctttacaaggtaatcaaatgcatt |
2606932 |
T |
|
| Q |
167 |
tacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcct |
266 |
Q |
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| T |
2606933 |
tacataataattaaatgcattgaattggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactaactaatgacaattgatcct |
2607032 |
T |
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| Q |
267 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
319 |
Q |
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| T |
2607033 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
2607085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 31137784 - 31137831
Alignment:
| Q |
21 |
gacatcatcactaaagaatgtggtattgagctccaaattagcaaagtc |
68 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31137784 |
gacataatcactaaagaatgtggtattgagctccaaattagcaaagtc |
31137831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 69 - 319
Target Start/End: Complemental strand, 31901621 - 31901369
Alignment:
| Q |
69 |
tataaaataacaaaggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatt |
166 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31901621 |
tataaaataacaaaggctaatatatttatgctatatcttttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatt |
31901522 |
T |
|
| Q |
167 |
tacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcct |
266 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |
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| T |
31901521 |
tacataataattaaatgcattgaatgggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaactttactgactaatgacagttgatcat |
31901422 |
T |
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| Q |
267 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31901421 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
31901369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 71 - 316
Target Start/End: Complemental strand, 31925485 - 31925239
Alignment:
| Q |
71 |
taaaataacaaaggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcattta |
168 |
Q |
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||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31925485 |
taaaataacaaaggctaatatatttatgctatatcttttacacacggttgtacaaggctttatagttgtccaagctttacaaggtaatcaaatgcattta |
31925386 |
T |
|
| Q |
169 |
cataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcctaa |
268 |
Q |
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| T |
31925385 |
cataataattaaatttattga-ttggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaactgtactgactaatgacagttgatcctaa |
31925287 |
T |
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| Q |
269 |
acaataatagttatgcatgaattaagggaagtcaacaatgatgatgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31925286 |
acaataatagttatgcatgaattaagggaagtcaacaatgatgatgat |
31925239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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