View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20034_low_1 (Length: 267)
Name: NF20034_low_1
Description: NF20034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20034_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 43452990 - 43453238
Alignment:
| Q |
1 |
taggagggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaactt |
100 |
Q |
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| T |
43452990 |
taggagggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaactt |
43453089 |
T |
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| Q |
101 |
gggaaaggaaagtttggaactacttcactttgtttggagaaatcaaccgggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagaga |
200 |
Q |
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| T |
43453090 |
gggaaaggaaagtttggaactacttcactttgtttggagaaatcaaccaggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagaga |
43453189 |
T |
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| Q |
201 |
atgatatagaggatgtgaggagggagattgaaataatgcatcacttagt |
249 |
Q |
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| T |
43453190 |
atgatatagaggatgtgaggagggagattgaaataatgcatcacttagt |
43453238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 43462433 - 43462674
Alignment:
| Q |
5 |
agggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaacttggga |
104 |
Q |
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| T |
43462433 |
agggtaacagcaaaaagtgcaggtcttcgagaagaatcaattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggag |
43462532 |
T |
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| Q |
105 |
aaggaaagtttggaactacttcactttgtttggagaaatcaaccgggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagagaatga |
204 |
Q |
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| T |
43462533 |
aaggggaatttggaactacttcactttgtttggagaaatcaaccgggaaaacgtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatga |
43462632 |
T |
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| Q |
205 |
tatagaggatgtgaggagggagattgaaataatgcatcactt |
246 |
Q |
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| T |
43462633 |
tgtagaggatgtgaggagggaaattaagataatgcatcactt |
43462674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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