View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20035_high_3 (Length: 381)
Name: NF20035_high_3
Description: NF20035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20035_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 12201587 - 12201369
Alignment:
| Q |
17 |
tagggcaattaaataactaaaaatcaatgg-aaaacgaaacataaagtttgaaacaagtagccaatgttcataaaaaagagcaaagaatgatggaaatat |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12201587 |
tagggcaattaaataactaaaaatcaatgggaaaacgaaacataaagtttgaaacaagtagccaatgttcataaaaaagagcaaagaatgatggaaatat |
12201488 |
T |
|
| Q |
116 |
cttgtaatttctaacaacagatttagaaggaaaatgatccttcaacttgttttgacttgccatcttctttggccaaataacttccagttaattaaacctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12201487 |
cttgtaatttctaacaacagatttagaaggaaaatgatccttcaacttgttttgacttgccatcttctttggccaaataacttccagttaattaaacctg |
12201388 |
T |
|
| Q |
216 |
caaaaataaatatgtcaat |
234 |
Q |
| |
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||||||||||||||||||| |
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| T |
12201387 |
caaaaataaatatgtcaat |
12201369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 12446015 - 12445797
Alignment:
| Q |
17 |
tagggcaattaaataactaaaaatcaatgg-aaaacgaaacataaagtttgaaacaagtagccaatgttcataaaaaagagcaaagaatgatggaaatat |
115 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12446015 |
tagggcaattaaataactaaaaatcaatgggaaaacgaaacataaagtttgaaacaagtagccaatgttcataaaaaagagcaaagaatgatggaaatat |
12445916 |
T |
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| Q |
116 |
cttgtaatttctaacaacagatttagaaggaaaatgatccttcaacttgttttgacttgccatcttctttggccaaataacttccagttaattaaacctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12445915 |
cttgtaatttctaacaacagatttagaaggaaaatgatccttcaacttgttttgacttgccatcttctttggccaaataacttccagttaattaaacctg |
12445816 |
T |
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| Q |
216 |
caaaaataaatatgtcaat |
234 |
Q |
| |
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||||||||||||||||||| |
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| T |
12445815 |
caaaaataaatatgtcaat |
12445797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 12201333 - 12201203
Alignment:
| Q |
235 |
cacagcttcaatcaaatttaatagagtgcaatgaaattagagaacaaaagcttctttctctttcaaaattcattaaaaactgtttcaagcagtgatagca |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12201333 |
cacagcttcaatcaaatttaatagagtgcaatgaaattagagaacaaaagcttctttctctttcaaaattcattaaaaactgtttcaagcagtgatagca |
12201234 |
T |
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| Q |
335 |
aaatacatttatactcaatcaagccacacat |
365 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
12201233 |
aaatacatttatactcaatcaagccacacat |
12201203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 12445761 - 12445631
Alignment:
| Q |
235 |
cacagcttcaatcaaatttaatagagtgcaatgaaattagagaacaaaagcttctttctctttcaaaattcattaaaaactgtttcaagcagtgatagca |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12445761 |
cacagcttcaatcaaatttaatagagtgcaatgaaattagagaacaaaagcttctttctctttcaaaattcattaaaaactgtttcaagcagtgatagca |
12445662 |
T |
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| Q |
335 |
aaatacatttatactcaatcaagccacacat |
365 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
12445661 |
aaatacatttatactcaatcaagccacacat |
12445631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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