View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20035_low_2 (Length: 537)

Name: NF20035_low_2
Description: NF20035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20035_low_2
NF20035_low_2
[»] chr7 (12 HSPs)
chr7 (19-521)||(6857107-6857609)
chr7 (277-518)||(27626364-27626605)
chr7 (21-172)||(27625596-27625747)
chr7 (178-281)||(27626050-27626153)
chr7 (213-281)||(36598318-36598386)
chr7 (213-281)||(40530371-40530439)
chr7 (230-281)||(12834941-12834992)
chr7 (206-281)||(33894667-33894742)
chr7 (230-272)||(29287276-29287318)
chr7 (230-267)||(44989908-44989945)
chr7 (206-274)||(20553150-20553218)
chr7 (229-281)||(48157098-48157150)
[»] chr6 (6 HSPs)
chr6 (229-281)||(34939784-34939836)
chr6 (206-281)||(2460106-2460181)
chr6 (230-281)||(9027618-9027669)
chr6 (229-283)||(32848574-32848628)
chr6 (229-281)||(5566155-5566207)
chr6 (221-281)||(34939553-34939613)
[»] chr3 (12 HSPs)
chr3 (229-281)||(37273174-37273226)
chr3 (222-280)||(42817193-42817251)
chr3 (230-282)||(24624249-24624301)
chr3 (230-281)||(39602189-39602240)
chr3 (227-277)||(20192582-20192632)
chr3 (211-281)||(43115096-43115166)
chr3 (230-279)||(1217779-1217828)
chr3 (206-279)||(24281089-24281162)
chr3 (206-279)||(31010444-31010517)
chr3 (230-279)||(43397869-43397918)
chr3 (213-281)||(37155041-37155109)
chr3 (213-281)||(37200396-37200464)
[»] chr4 (5 HSPs)
chr4 (206-281)||(27123307-27123382)
chr4 (228-281)||(29375943-29375996)
chr4 (235-281)||(24929533-24929579)
chr4 (222-275)||(27725260-27725313)
chr4 (229-281)||(6987719-6987771)
[»] chr8 (5 HSPs)
chr8 (211-281)||(11569417-11569487)
chr8 (213-264)||(30987953-30988004)
chr8 (227-281)||(12361232-12361286)
chr8 (229-281)||(5088892-5088944)
chr8 (229-281)||(9540974-9541026)
[»] chr5 (6 HSPs)
chr5 (227-281)||(13604825-13604879)
chr5 (213-281)||(4273339-4273407)
chr5 (230-281)||(41957430-41957481)
chr5 (229-278)||(2092523-2092572)
chr5 (229-281)||(1019444-1019496)
chr5 (229-281)||(35963281-35963333)
[»] chr1 (13 HSPs)
chr1 (206-280)||(32515396-32515470)
chr1 (237-281)||(29723529-29723573)
chr1 (206-274)||(49692007-49692075)
chr1 (230-281)||(17420243-17420294)
chr1 (231-274)||(45327627-45327670)
chr1 (231-281)||(15687066-15687116)
chr1 (227-281)||(27140518-27140572)
chr1 (227-281)||(37811892-37811946)
chr1 (229-274)||(27145589-27145634)
chr1 (228-281)||(28689429-28689482)
chr1 (230-274)||(27145968-27146012)
chr1 (245-281)||(35669012-35669048)
chr1 (229-281)||(39270403-39270455)
[»] chr2 (5 HSPs)
chr2 (212-264)||(41851125-41851177)
chr2 (229-281)||(43065428-43065480)
chr2 (222-281)||(1494417-1494476)
chr2 (230-281)||(9878661-9878712)
chr2 (234-278)||(11344753-11344797)
[»] scaffold0053 (1 HSPs)
scaffold0053 (229-277)||(20209-20257)
[»] scaffold0024 (1 HSPs)
scaffold0024 (229-281)||(27616-27668)


Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Original strand, 6857107 - 6857609
Alignment:
Q  19 atgtgttataccattctaatatcttcattgttttatgcttgaaggaatttcatgtggaacaatctgataggcacaataccgaaggaaattggacatatta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6857107 atgtgttataccattctaatatcttcattgttttatgcttgaaggaatttcatgtggaacaatctgataggcacaataccgaaggaaattggacatatta 6857206  T
Q  119 catcattgatactcttgtaagaaccttaccaaagaagatgaattattagtattgtttcattgatttgttttagcttatctaattatgtaagaacttgtga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6857207 catcattgatactcttgtaagaaccttaccaaagaagatgaattattagtattgtttcattgatttgttttagcttatctaattatgtaagaacttgtga 6857306  T
Q  219 gtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttattattcagacatattttctatgcaggctattgagtggaa 318  Q
     |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6857307 atttgttcgagagagcttatggaaacagcttatgccatgtccataagttgttttcaacttattattcagacatattttctatgcaggctcttgagtggaa 6857406  T
Q  319 ataaattatctggtagtttaccagatgagcttggcaaccttacaaatttgaatagactccaagtagatgaaaaccaattgtcaggtcttgtgccaaaatc 418  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6857407 ataaattatctggtagtttaccagatgagcttggcaaccttaaaaatttgaatagactccaagtagatgaaaaccaattgtcaggtcttgtgccaaaatc 6857506  T
Q  419 atttgctaatttggtccatgttaaacacctgtaagtggatctctaaaccaaatgcatcgtcgacaaacaccgagttcaatttcttacatgtactttatct 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6857507 atttgctaatttggtccatgttaaacacctgtaagtggatctctaaaccaaatgcatcgtcgacaaacaccgggttcaatttcttacatgtactttatct 6857606  T
Q  519 act 521  Q
    |||    
T  6857607 act 6857609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 277 - 518
Target Start/End: Original strand, 27626364 - 27626605
Alignment:
Q  277 ttattattcagacatattttctatgcaggctattgagtggaaataaattatctggtagtttaccagatgagcttggcaaccttacaaatttgaatagact 376  Q
    |||| |||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||    
T  27626364 ttataattctgacatattttccatgcaggctcttgaatggaaataaattatctggtagtttaccagatgagcttggcaaccttaaaaatttaactagact 27626463  T
Q  377 ccaagtagatgaaaaccaattgtcaggtcttgtgccaaaatcatttgctaatttggtccatgttaaacacctgtaagtggatctctaaaccaaatgcatc 476  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||| || |||||| ||||||||||||||| ||||||||||||||||||    
T  27626464 ccaactagatgaaaaccaattgtcgggtcctgtgccaaaatcatttgctaacttgctcaatgttagacacctgtaagtggacctctaaaccaaatgcatc 27626563  T
Q  477 gtcgacaaacaccgagttcaatttcttacatgtactttatct 518  Q
    ||| ||||||||||||||  ||||||||||||||||||||||    
T  27626564 gtcaacaaacaccgagttggatttcttacatgtactttatct 27626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 27625596 - 27625747
Alignment:
Q  21 gtgttataccattctaatatcttcattgttttatgcttgaaggaatttcatgtggaacaatctgataggcacaataccgaaggaaattggacatattaca 120  Q
    ||||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||    
T  27625596 gtgttctaccaagctaatatcttcattgttttatgcttgaagggatttcatgtggaacaatctgacaggcacaataccaaaggaaattggacaaattaca 27625695  T
Q  121 tcattgatactcttgtaagaaccttaccaaagaagatgaattattagtattg 172  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  27625696 tcattgagactcttgtaagaactttaccaaagaagatgaattattagtattg 27625747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 27626050 - 27626153
Alignment:
Q  178 ttgatttgttttagcttatctaattatgtaagaacttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaact 277  Q
    |||| |||||| |||||||||| | | || ||  |||||||| ||||| |||| |||||||||||| |||||||| |||||||||||| |||||| ||||    
T  27626050 ttgacttgtttcagcttatctactgacgtcagctcttgtgagattgtttgagaaagcttatggaaacagcttatgacatgtccataaactgttttaaact 27626149  T
Q  278 tatt 281  Q
    ||||    
T  27626150 tatt 27626153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 36598318 - 36598386
Alignment:
Q  213 ttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||| ||||| ||||||||||||||||| | |||||| ||||| |||||  |||||||| ||||||    
T  36598318 ttgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttatt 36598386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 40530371 - 40530439
Alignment:
Q  213 ttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||||| | ||||  ||||||||| || ||| | |||||| |||||||||||||||||||||    
T  40530371 ttgtgagtttgtttgggagatattatggaaatagtttagggcatgtctataaattgttttcaacttatt 40530439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 12834941 - 12834992
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||| ||||||||| |||||||| |||||||||||| |||||||| ||||||    
T  12834941 agagattatggaaacagcttatgacatgtccataaactgttttcagcttatt 12834992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 33894742 - 33894667
Alignment:
Q  206 taagaacttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||| |||||||||  |||| | ||||||||||| ||| ||| |||| ||||||||||| ||||||||| ||||||    
T  33894742 taagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttatt 33894667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 29287318 - 29287276
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgtttt 272  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  29287318 agagcttatgaaaatagcttatgacatgtccataaattgtttt 29287276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 44989908 - 44989945
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaatt 267  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  44989908 agagcttatggaaatagcttatgacatgtccataaatt 44989945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 20553218 - 20553150
Alignment:
Q  206 taagaacttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttca 274  Q
    |||| |||||||||  |||||  ||||||||||||||| |||||| | ||||| ||||| |||||||||    
T  20553218 taagcacttgtgagactgttcaggagagcttatggaaacagcttacgacatgttcataagttgttttca 20553150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 48157098 - 48157150
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||||||| |||| | ||||||||||||||||||  |||||||| ||||||    
T  48157098 gagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatt 48157150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 34939836 - 34939784
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||    
T  34939836 gagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatt 34939784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 2460106 - 2460181
Alignment:
Q  206 taagaacttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||| |||||||||  |||| ||||||||||||||||| | |||||| ||||||  ||| ||||||||||||||||    
T  2460106 taagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatt 2460181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 9027669 - 9027618
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||||||||||| | |||||| ||||||||||| ||||||||| ||||||    
T  9027669 agagcttatggaaataacttatgacatgtccataagttgttttcagcttatt 9027618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 32848574 - 32848628
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttattat 283  Q
    ||||||||||||||| ||||||||  || ||||||| |||| |||||||||||||    
T  32848574 gagagcttatggaaatagcttatgatatttccataatttgtgttcaacttattat 32848628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 5566155 - 5566207
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||| ||| ||| |||||||  ||||||||||| ||||||||||||||||    
T  5566155 gagagctaatgaaaacagcttattacatgtccataagttgttttcaacttatt 5566207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 34939613 - 34939553
Alignment:
Q  221 ttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||| ||||||||||||||||| | |||||| || |||| ||| ||||||||| ||||||    
T  34939613 ttgtttgagagagcttatggaaacaacttatgacacgtccgtaagttgttttcagcttatt 34939553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 37273226 - 37273174
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||||||| | |||||| ||||||||||| ||||||||||||||||    
T  37273226 gagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatt 37273174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 42817193 - 42817251
Alignment:
Q  222 tgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttat 280  Q
    |||| ||||||||||||||||| ||| |||| ||||||||||| ||||||||| |||||    
T  42817193 tgtttgagagagcttatggaaacagcatatgacatgtccataagttgttttcagcttat 42817251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 24624301 - 24624249
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgttttcaacttatta 282  Q
    |||||||||| ||| |||||||| |||||||||||| |||||||| |||||||    
T  24624301 agagcttatgaaaacagcttatgacatgtccataaactgttttcagcttatta 24624249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 39602189 - 39602240
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||||||| | | |||||||| ||||| ||||||||||||||||||||||    
T  39602189 agagcttatgaagacagcttatgacatgttcataaattgttttcaacttatt 39602240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 20192582 - 20192632
Alignment:
Q  227 gagagagcttatggaaagagcttatgccatgtccataaattgttttcaact 277  Q
    |||||||||||| |||| |||||||| |||||||||||  |||||||||||    
T  20192582 gagagagcttatagaaacagcttatgacatgtccataagctgttttcaact 20192632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 43115166 - 43115096
Alignment:
Q  211 acttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||| ||||| |  |||| ||||||||| | |||||| ||||||||||| ||||||||| ||||||    
T  43115166 acttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatt 43115096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 1217779 - 1217828
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgttttcaactta 279  Q
    |||||||| ||||| |||||||| ||||||||||| ||||||||| ||||    
T  1217779 agagcttacggaaacagcttatgacatgtccataagttgttttcatctta 1217828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 24281162 - 24281089
Alignment:
Q  206 taagaacttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaactta 279  Q
    |||| ||||||| | ||||| ||||||||||||| ||| | ||||||  || ||||||| ||||||||||||||    
T  24281162 taagcacttgtgtgattgtttgagagagcttatgaaaacaacttatgatatctccataagttgttttcaactta 24281089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 31010517 - 31010444
Alignment:
Q  206 taagaacttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaactta 279  Q
    ||||||||||||||| |||| | || ||||||| |||| | |||||| |||||||||||  |||||||| ||||    
T  31010517 taagaacttgtgagtgtgtttgtgaaagcttatagaaacaacttatgacatgtccataagctgttttcagctta 31010444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 43397918 - 43397869
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgttttcaactta 279  Q
    |||| |||| |||| |||||||  ||||||||||||||||||||||||||    
T  43397918 agagtttatagaaatagcttataacatgtccataaattgttttcaactta 43397869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 37155109 - 37155041
Alignment:
Q  213 ttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||||  ||||||| |||| ||||||||| | |||||  ||||||||||| |||||||| |||||||    
T  37155109 ttgtgagactgttcgaaagagtttatggaaataacttattacatgtccataagttgttttctacttatt 37155041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 37200464 - 37200396
Alignment:
Q  213 ttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||||  ||||||| |||| ||||||||| | |||||  ||||||||||| |||||||| |||||||    
T  37200464 ttgtgagactgttcgaaagagtttatggaaataacttattacatgtccataagttgttttctacttatt 37200396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 27123307 - 27123382
Alignment:
Q  206 taagaacttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||| |||||||||  |||| ||||||||||||||||| | |||||| ||||||  ||| ||||||||||||||||    
T  27123307 taagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatt 27123382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 29375996 - 29375943
Alignment:
Q  228 agagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||||||||||||| |||||||| || |||||||  ||||||||||||||||    
T  29375996 agagagcttatggaaacagcttatgacaggtccatattttgttttcaacttatt 29375943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 24929579 - 24929533
Alignment:
Q  235 ttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||| |||||||| ||||| ||||||||||||||| ||||||    
T  24929579 ttatggaaacagcttatggcatgttcataaattgttttcagcttatt 24929533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 27725313 - 27725260
Alignment:
Q  222 tgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaa 275  Q
    |||| ||||||||||||||||| | |||||| |||||||||||| | |||||||    
T  27725313 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaa 27725260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 6987719 - 6987771
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||||| | | |||||| |||||||||||| | |||||||||||||    
T  6987719 gagagcttatggatacaacttatgacatgtccataaactattttcaacttatt 6987771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 11569417 - 11569487
Alignment:
Q  211 acttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||||||  ||||  |||||||||||||||| |||||||| ||||| ||||| ||||||||| ||||||    
T  11569417 acttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttatt 11569487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 30987953 - 30988004
Alignment:
Q  213 ttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataa 264  Q
    |||||||| |||| ||||||||||||||||| | |||||| |||||||||||    
T  30987953 ttgtgagtctgtttgagagagcttatggaaacaacttatgacatgtccataa 30988004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 12361286 - 12361232
Alignment:
Q  227 gagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||| ||||| |||| |||||||| |||||||||||  |||||||||||||||    
T  12361286 gagagatcttatagaaatagcttatgacatgtccataagctgttttcaacttatt 12361232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 5088944 - 5088892
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||||||| || ||||  |||||||||||  |||||||||||||||    
T  5088944 gagagcttatggaaacagtttataacatgtccataagctgttttcaacttatt 5088892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 9540974 - 9541026
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||||||| | |||||| ||||||||||| |||| |||| ||||||    
T  9540974 gagagcttatggaaacatcttatgacatgtccataatttgtgttcagcttatt 9541026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 13604825 - 13604879
Alignment:
Q  227 gagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||||| ||| |||||||| ||||||||||  ||||||||||||||||    
T  13604825 gagagagcttatgaaaacagcttatgacatgtccatacgttgttttcaacttatt 13604879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 4273339 - 4273407
Alignment:
Q  213 ttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||| ||||| |||||| | |||||||| |||||||| | |||| |||| ||||||||||||||||    
T  4273339 ttgtgagattgtttgagagaacctatggaaacagcttatgacttgtctataagttgttttcaacttatt 4273407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 41957430 - 41957481
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||||| ||||| |||||||| ||||||||||| ||||||||| ||||||    
T  41957430 agagcttacggaaacagcttatgacatgtccataagttgttttcatcttatt 41957481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 2092523 - 2092572
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaactt 278  Q
    |||||||||| |||| | |||||| ||||||||||| |||||||||||||    
T  2092523 gagagcttattgaaacaacttatggcatgtccataagttgttttcaactt 2092572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 1019444 - 1019496
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||  ||| ||||||||||||| |||||| ||||||||| ||||||    
T  1019444 gagagcttataaaaatagcttatgccatggccataagttgttttcatcttatt 1019496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 35963333 - 35963281
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||| |||||||||| ||| |||| ||||||||||| ||||||||| ||||||    
T  35963333 gagaacttatggaaatagcgtatgacatgtccataagttgttttcagcttatt 35963281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 32515396 - 32515470
Alignment:
Q  206 taagaacttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttat 280  Q
    |||| |||||||||  |||| | ||||||||||||||| ||| |||| |||||| |||| |||||||||||||||    
T  32515396 taagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttat 32515470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 29723573 - 29723529
Alignment:
Q  237 atggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||| |||||||| |||||||||||| |||||||||||||||    
T  29723573 atggaaacagcttatgacatgtccataaactgttttcaacttatt 29723529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 49692007 - 49692075
Alignment:
Q  206 taagaacttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttca 274  Q
    ||||||||||||||  |||| |||||| |||||| ||| |||||||| ||||||||||  |||||||||    
T  49692007 taagaacttgtgagactgtttgagagaacttatgaaaatagcttatgacatgtccatagtttgttttca 49692075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 17420294 - 17420243
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||||||| ||| | |||||  ||||||||||||||||||||||||||||    
T  17420294 agagcttatgaaaacaacttattacatgtccataaattgttttcaacttatt 17420243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 45327670 - 45327627
Alignment:
Q  231 gagcttatggaaagagcttatgccatgtccataaattgttttca 274  Q
    ||||||||||||| | |||||| |||||||||||||||||||||    
T  45327670 gagcttatggaaacaacttatgacatgtccataaattgttttca 45327627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 15687066 - 15687116
Alignment:
Q  231 gagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||||  | |||||| ||||||||||||||||||||| ||||||    
T  15687066 gagcttatggaatcaccttatgacatgtccataaattgttttcagcttatt 15687116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 27140572 - 27140518
Alignment:
Q  227 gagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||| ||| ||||| |||||||| ||||||||||| ||||||||| ||||||    
T  27140572 gagagagtttaaggaaacagcttatgacatgtccataagttgttttcagcttatt 27140518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 37811946 - 37811892
Alignment:
Q  227 gagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||| |||||| ||| |||||||| ||||| |||||| |||||||||||||||    
T  37811946 gagagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttatt 37811892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 27145634 - 27145589
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttca 274  Q
    ||||||||||||||| |||||||| ||||||||||| || ||||||    
T  27145634 gagagcttatggaaaaagcttatgacatgtccataagttattttca 27145589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 28689429 - 28689482
Alignment:
Q  228 agagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||| |||| ||||| |||||||| ||||||||||| ||||||||| ||||||    
T  28689429 agagaacttacggaaacagcttatgacatgtccataagttgttttcagcttatt 28689482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 27146012 - 27145968
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgttttca 274  Q
    |||||||||||||| |||||||| ||||||||||| || ||||||    
T  27146012 agagcttatggaaacagcttatgacatgtccataagttattttca 27145968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 35669048 - 35669012
Alignment:
Q  245 agcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||  |||||||||||||||||||||||||||    
T  35669048 agcttatgatatgtccataaattgttttcaacttatt 35669012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 39270403 - 39270455
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||| ||| ||||| || |||||||||||  |||||||||||||||    
T  39270403 gagagcttatgaaaacagcttttggcatgtccataagctgttttcaacttatt 39270455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 41851125 - 41851177
Alignment:
Q  212 cttgtgagtttgttcgagagagcttatggaaagagcttatgccatgtccataa 264  Q
    |||||||||||||| || |||||||| ||||| |||||||| |||||||||||    
T  41851125 cttgtgagtttgtttgaaagagcttacggaaacagcttatgacatgtccataa 41851177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 43065428 - 43065480
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||| ||| | |||||| ||||||||||||||||||||| ||||||    
T  43065428 gagagcttatgaaaacaacttatgacatgtccataaattgttttcagcttatt 43065480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 1494417 - 1494476
Alignment:
Q  222 tgttcgagagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||| ||||||||||||| ||| |||||||| |||||||||||| |||||| | ||||||    
T  1494417 tgtttgagagagcttatgaaaacagcttatgacatgtccataaactgtttttagcttatt 1494476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 9878661 - 9878712
Alignment:
Q  230 agagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    |||||||||||||| | |||||| ||||||||||| |||||||| |||||||    
T  9878661 agagcttatggaaacaacttatgacatgtccataagttgttttcgacttatt 9878712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 11344753 - 11344797
Alignment:
Q  234 cttatggaaagagcttatgccatgtccataaattgttttcaactt 278  Q
    |||||||||| | |||||| |||||||||||| ||||||||||||    
T  11344753 cttatggaaacaacttatgacatgtccataaactgttttcaactt 11344797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 20257 - 20209
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaact 277  Q
    |||||||||| |||| |||||||| ||||| ||||||||||||| ||||    
T  20257 gagagcttatagaaacagcttatggcatgtacataaattgttttaaact 20209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 27668 - 27616
Alignment:
Q  229 gagagcttatggaaagagcttatgccatgtccataaattgttttcaacttatt 281  Q
    ||||||||||||||| |||||||| |||| | |||| ||||||||| ||||||    
T  27668 gagagcttatggaaatagcttatgacatggctataagttgttttcagcttatt 27616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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