View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20035_low_5 (Length: 359)
Name: NF20035_low_5
Description: NF20035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20035_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 8914281 - 8914627
Alignment:
| Q |
1 |
tttgtctaatatatattagacaaactctatgtacaaaataaataaaaatacatttcttcacaatcatatgaacggaccaacaataataacttcaacacta |
100 |
Q |
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| T |
8914281 |
tttgtctaatatatattagacaaactctatgtacaaaataaataaaaatacatttcgtcacaatcatatgaacggaccaacaataataacttcaacacta |
8914380 |
T |
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| Q |
101 |
tccaaaaccagtctatttttctttaagccaaatcctatacttaagcatatttacttaccatatgcttatgcttttgttgagggttactttctcttgaatc |
200 |
Q |
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| T |
8914381 |
tccaaaaccagtttatttttctttaagccaaatcctatacttaagcatatttacttaccatatgcttatgcttttgttgagggttactttctcttgaatc |
8914480 |
T |
|
| Q |
201 |
cacttagcgatattttttctctttctatcattcttaatagcagtgttagattccatatagattaggtctccctaattttatattttgttgaatttgttta |
300 |
Q |
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| T |
8914481 |
cactttgcgatattttttctctttctatcattcttaatagcagtgttagattccatatagattaggtctccctaattttatattttgttgaatttgttta |
8914580 |
T |
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| Q |
301 |
ggaatgcaccatctttttgttttctttatttcttatcaaatgatatt |
347 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8914581 |
gggttgcaccatctttttgttttctttatttcttatcaaatgatatt |
8914627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8914304 - 8914260
Alignment:
| Q |
1 |
tttgtctaatatatattagacaaactctatgtacaaaataaataa |
45 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8914304 |
tttgtctaatatatattagacaaactctatctacaaaataaataa |
8914260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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