View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20035_low_7 (Length: 273)
Name: NF20035_low_7
Description: NF20035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20035_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 8914304 - 8914049
Alignment:
| Q |
1 |
tttgtctaatatatattagacaaactctatgtacaaaataaataatattttggataccacatataattatactttgataataaaaggttgatatcaagaa |
100 |
Q |
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| T |
8914304 |
tttgtctaatatatattagacaaactctatctacaaaataaataatattttggataccacatataattatactttgataataaaagcttgatatcaagaa |
8914205 |
T |
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| Q |
101 |
tttaaacaacaagatttaagaagaaacaattctagataaggttttccttagctctcgattaaactccatattatcaggttcttttctcttagaaccggag |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
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| T |
8914204 |
tttaaacaacaagatttcggaagaaacaattctagataaggttttccttagctctcgattaaactccatattatcaggttcttttctctcataactggag |
8914105 |
T |
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| Q |
201 |
gattaacaagaaacaagaatgtaaacaattcgtccttgtgcatgtatgtactagat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8914104 |
gattaacaagaaacaagaatgtaaacaattcgtccttgtgcatgtatgtactagat |
8914049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8914281 - 8914325
Alignment:
| Q |
1 |
tttgtctaatatatattagacaaactctatgtacaaaataaataa |
45 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8914281 |
tttgtctaatatatattagacaaactctatgtacaaaataaataa |
8914325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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