View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20036_high_1 (Length: 596)
Name: NF20036_high_1
Description: NF20036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20036_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 583
Target Start/End: Original strand, 40509374 - 40509941
Alignment:
| Q |
19 |
agaagtgcaacataaaaacaatggctgaaatcatataacaagtcatattacaaaaaatatgtctaattatcaaacatataactaaatgata----gtcct |
114 |
Q |
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| T |
40509374 |
agaagtgcaacataaaaacaatggctgaaatcatataacaagtcatattacaaaaaatatgtttaattatcaaacatataactaaatgatatatagtcct |
40509473 |
T |
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| Q |
115 |
ttccnnnnnnnnnnnnnnnnctaaatgatagtcgaaaatagttgtgcggtcacaataaactacaattaaaatctttcaaagaaaaagttgttaatagcta |
214 |
Q |
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| T |
40509474 |
ttc-aaaaaaaaaaaaaaaactaaatgatagtcgaaaatagttgtgcggtcaccataaactacaattaaaatctttcaaagaaaaagttgttaatagcta |
40509572 |
T |
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| Q |
215 |
ctgaagatcattgatcaactttatacccgatccaaaatccacacatctcctcatgtatggaaaagttgtgccaatatcatccaagggtttttccttgcaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40509573 |
ctgaagatcattgatcaactttatacccgatccaaaatccacacatctcctcatgtatggaaaagttgtgccaatatcatccaagggtttttccttgcaa |
40509672 |
T |
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| Q |
315 |
tcatgtttaggaggtatatgaaaacaaggctccatagagacatcttgaacgcaaggcgaatccgggactttggcgtctattaatttgtaaagaacccacg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40509673 |
tcatgtttaggaggtatatgaaaacaaggctccatagagacatcttgaacgcaaggcgaatccgggactttggcgtctattaatttgtaaagaacccacg |
40509772 |
T |
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| Q |
415 |
gctttatgcctcccaaactctgagccacatacccaaaagttgataaagcgctagtaaccaaaacatcacataaactcaataggtatatatctgtccatgc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40509773 |
gctttatgcctcccaaactctgagccacatacccaaaagttgataaagcgctagtaaccaaaacatcacataaactcaataggtatatatctgtccatgc |
40509872 |
T |
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| Q |
515 |
tttcttgttgtgcaagttatcaccaaacttttgattctcttcatgacttggctgataaacccctatgct |
583 |
Q |
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| T |
40509873 |
tttcttgttgtgcaagttatcaccaaacttttgattctcttcatgacttggctgataaacccctatgct |
40509941 |
T |
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