View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20036_high_3 (Length: 488)
Name: NF20036_high_3
Description: NF20036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20036_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 5 - 471
Target Start/End: Complemental strand, 15182350 - 15181884
Alignment:
| Q |
5 |
ccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatacaacactcctcattgatacca |
104 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15182350 |
ccaagtgcaatgaccattcctaatgggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatacaacactcctcattgatacca |
15182251 |
T |
|
| Q |
105 |
cacaaattgcctataaatgaaacaaccacaaagtctccacattggttaaattatagttcataaataccgtttttaaagttgtgatgcctttataggtcta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15182250 |
cacaaattgcctataaatgaaacaaccacaaagtctccacattggttaaattatagttcataaataccgtttttaaagttgtgatgcctttataggtcta |
15182151 |
T |
|
| Q |
205 |
ggttcaaatattgtggattaaagattaacaggttcaaattttacatcactaacatgttcttaattttcttaagtttgtacttaccgaataacacacagct |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15182150 |
ggttcaaatattgtggattaaagattaacaggttcaaattttacatcactaacatgttcttaattttcttaagtttgtacttaccgaataacacacagct |
15182051 |
T |
|
| Q |
305 |
accaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagatagaattaccaccatgctgcaacaaatgc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15182050 |
accaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagatagaattaccaccatgctgcaacaaatgc |
15181951 |
T |
|
| Q |
405 |
ttgttaccactagctcttcaggataatcccttataatccaagtctgtatatatatgtggaaaaagat |
471 |
Q |
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| T |
15181950 |
ttgttaccactagctcttcaggataatcccttataatccaagtctgtatatatatgtggaaaaagat |
15181884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 15192299 - 15192179
Alignment:
| Q |
5 |
ccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatacaacactcctcattgatacca |
104 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||||| |||||||| |
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| T |
15192299 |
ccaagtgcaatgaccactcttaaagggttgaacatagctacatatattggtccttttttacgaaatgcccatttgtttacaacactcctcaatgatacca |
15192200 |
T |
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| Q |
105 |
cacaaattgcctataaatgaa |
125 |
Q |
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|| | |||||||||||||||| |
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| T |
15192199 |
caaatattgcctataaatgaa |
15192179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 283 - 458
Target Start/End: Complemental strand, 15203977 - 15203802
Alignment:
| Q |
283 |
acttaccgaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagatagaatt |
382 |
Q |
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|||||| || |||||||||| || |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||| ||| |
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| T |
15203977 |
acttactgagtaacacacagatagcaactctttatcaggtctgagtctccaagcttttgaatttccctctgcaatgagagctacaatggtagatatgatt |
15203878 |
T |
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| Q |
383 |
accaccatgctgcaacaaatgcttgttaccactagctcttcaggataatcccttataatccaagtctgtatatata |
458 |
Q |
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||||| | | |||||||||| |||||| |||||||||||| ||||||||| | | |||||||||||| ||||||| |
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| T |
15203877 |
accacaaaacagcaacaaatggttgttatcactagctcttctggataatccttgacaatccaagtctgcatatata |
15203802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 283 - 459
Target Start/End: Complemental strand, 15210752 - 15210576
Alignment:
| Q |
283 |
acttaccgaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagatagaatt |
382 |
Q |
| |
|
|||||| || |||||||||| || |||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||||| | ||||| ||| |
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| T |
15210752 |
acttactgagtaacacacagatagcaactctttatcaggtctgagtctccaagcatttgaatttccctctgcaatgagagctacaatggtagatatgatt |
15210653 |
T |
|
| Q |
383 |
accaccatgctgcaacaaatgcttgttaccactagctcttcaggataatcccttataatccaagtctgtatatatat |
459 |
Q |
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| T |
15210652 |
accacaaaacagcaacaaatggtgtttatcactagctcttctggataatccctgacaatccaagtctgtatatatat |
15210576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 15204829 - 15204728
Alignment:
| Q |
5 |
ccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatacaacactcctcattgatacca |
104 |
Q |
| |
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|||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |||| | |||||||| |
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| T |
15204829 |
ccaagtgcaatgaccactcttaaagggttgaaggtagctacatatattggtcctttcttacgacatgcccatgtgtttacaacattccttaatgatacca |
15204730 |
T |
|
| Q |
105 |
ca |
106 |
Q |
| |
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|| |
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| T |
15204729 |
ca |
15204728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 15211114 - 15210997
Alignment:
| Q |
7 |
aagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatacaacactcctcattgataccaca |
106 |
Q |
| |
|
|||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |||||||||| | || |||| || ||| |||| ||||| |
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| T |
15211114 |
aagtgcaatgaccactcttaaaggtttgaacatagctacatatattggtcctttcttacgacatgcccatgtctgtataacattcttcaatgattccaca |
15211015 |
T |
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| Q |
107 |
caaattgcctataaatga |
124 |
Q |
| |
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|| |||||||||||||| |
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| T |
15211014 |
aaagttgcctataaatga |
15210997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 450
Target Start/End: Complemental strand, 15192016 - 15191846
Alignment:
| Q |
280 |
tgtacttaccgaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagataga |
379 |
Q |
| |
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||||||||| ||| ||||||| |||||||||||| | | |||| | || |||||| | |||||||||||||| |||| ||||||||||| | ||| | |
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| T |
15192016 |
tgtacttactgaaaaacacactgctaccaactccttgttaggtttaagtatccaagcatttgaatttccctcaacaataagagctacaatgcctgattgt |
15191917 |
T |
|
| Q |
380 |
attaccaccatgctgcaacaaatgcttgttaccactagctcttcaggataatcccttataatccaagtctg |
450 |
Q |
| |
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|||||||||| ||| |||||| |||||| | ||| |||||||||||| || | ||| |||||||||| |
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| T |
15191916 |
attaccaccaagctaatacaaatagatgttactagtagttcttcaggataagccttgatagtccaagtctg |
15191846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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