View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20036_high_6 (Length: 368)
Name: NF20036_high_6
Description: NF20036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20036_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 108 - 343
Target Start/End: Original strand, 17736084 - 17736315
Alignment:
| Q |
108 |
aagtaataatcttcttcttcccggaggtaatctttataacgannnnnnnnngttgcagaatatgacaaaacatgaatcctacgctaaggaaaggatttgc |
207 |
Q |
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| T |
17736084 |
aagtaaaaatcttcttcttcccggaggtaatctttataacgatttttt----ttgcagaatatgacaaaacatgaatcctacgctaaggaaaggatttgc |
17736179 |
T |
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| Q |
208 |
ataagattaggaaaagataaatcatagacttatagtacatgatttatattgaatttaatttaggtggattcaacacgccccctctagatagagttacacc |
307 |
Q |
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| T |
17736180 |
gtaagattaggaaaagataaatcatagactcatagtacatgatttatattgaatttaatttaggtggattcaacacgccccctctagatagagttacacc |
17736279 |
T |
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| Q |
308 |
aggtaacatttatcttggtaagtaaatctacatgtt |
343 |
Q |
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| T |
17736280 |
aggtaacatttatcttggtaagtaaatctacatgtt |
17736315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 17735962 - 17736073
Alignment:
| Q |
9 |
agcagagacataataatttgatatcaagtgccaatttgtattttgataccaaatataataattaatctattgggtccacatttatttacttacgtgatca |
108 |
Q |
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| T |
17735962 |
agcagagacataatcatttgatatcaagtggcaatttgtattttgataccaaatataataattaatctattgggtccacatttatttacttacgtgatca |
17736061 |
T |
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| Q |
109 |
agtaataatctt |
120 |
Q |
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| T |
17736062 |
agtaataatctt |
17736073 |
T |
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