View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20036_low_12 (Length: 250)
Name: NF20036_low_12
Description: NF20036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20036_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 51736506 - 51736748
Alignment:
| Q |
1 |
cgatagcacatagcaggtattgtcatttgtcctcacacagagtaaacaatttctgggttcatgaactttaa-atgtttatattgaacacagttgtgtaca |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51736506 |
cgatagcacatagcaggtattgtcatttgtcctcacacagagtatacaaattctgggttcatgaactttaagatgtttatattgaacacagttgtgtaca |
51736605 |
T |
|
| Q |
100 |
tccataggaagagccaaggacatattggtgtaatcattttagtttagtgtttagtaaaattatttgttgaaatggtaatgtgtgtatatatggttcaaaa |
199 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
51736606 |
tccataggaagaaccaaggacatattggtgtaatcattttagtttagtgtttagtaaaattatttgttgaaatggtaatgtgtatatatatggttcaaaa |
51736705 |
T |
|
| Q |
200 |
ttttcccgttgctatagctaatacaactataattattttcttc |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51736706 |
ttttcccgttgctatagctaatacaactataattattttcttc |
51736748 |
T |
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