View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20036_low_13 (Length: 244)

Name: NF20036_low_13
Description: NF20036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20036_low_13
NF20036_low_13
[»] chr6 (9 HSPs)
chr6 (15-176)||(20770744-20770906)
chr6 (32-157)||(6942768-6942894)
chr6 (32-104)||(6947633-6947706)
chr6 (32-147)||(6921151-6921267)
chr6 (53-167)||(6935056-6935170)
chr6 (208-244)||(17369711-17369747)
chr6 (39-106)||(17369849-17369917)
chr6 (208-242)||(20770699-20770733)
chr6 (32-104)||(6954320-6954393)
[»] chr7 (14 HSPs)
chr7 (53-159)||(14076785-14076891)
chr7 (53-159)||(14386813-14386919)
chr7 (53-158)||(15571721-15571826)
chr7 (32-167)||(1985756-1985892)
chr7 (32-158)||(13416712-13416839)
chr7 (208-244)||(660834-660870)
chr7 (208-244)||(14076725-14076761)
chr7 (208-244)||(14386753-14386789)
chr7 (208-241)||(29430988-29431021)
chr7 (68-148)||(6864669-6864749)
chr7 (190-242)||(15571864-15571916)
chr7 (208-244)||(18514774-18514810)
chr7 (200-244)||(29867283-29867327)
chr7 (200-244)||(29874558-29874602)
[»] scaffold0354 (1 HSPs)
scaffold0354 (53-158)||(7602-7707)
[»] chr5 (2 HSPs)
chr5 (56-105)||(18964662-18964711)
chr5 (208-244)||(18964817-18964853)
[»] chr4 (3 HSPs)
chr4 (212-244)||(53774887-53774919)
chr4 (119-157)||(10460762-10460800)
chr4 (119-157)||(10468173-10468211)
[»] chr2 (2 HSPs)
chr2 (208-244)||(14514947-14514983)
chr2 (200-232)||(22051728-22051760)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 20770906 - 20770744
Alignment:
Q  15 ataattctgagcactataccaccaaattttataggtacttt-aattctctttagtctattatctctccaattatagataattgcttggtctccactattg 113  Q
    ||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||  ||||||||| || |||| |||    
T  20770906 ataatccttagcactataccaccaaatttcataggtactttcaattctctttagtctattatctttcaaattatagaggattgcttggactacacttttg 20770807  T
Q  114 attgtcaatatcagtgtatcacccttctcagaaagatacaatggaaccaatcgaccaacataa 176  Q
     || ||||||| ||||||||||| || ||||||||| |||||||||||||||||| |||||||    
T  20770806 gttctcaatattagtgtatcaccattatcagaaagacacaatggaaccaatcgacgaacataa 20770744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 6942768 - 6942894
Alignment:
Q  32 accaccaaattttataggtacttt-aattctctttagtctattatctctccaattatagataattgcttggtctccactattgattgtcaatatcagtgt 130  Q
    ||||||||||||||| |||||||| ||||||||||  |||||||||| || ||||||||| |||||||||||||     ||||||||  ||||||| |||    
T  6942768 accaccaaattttattggtacttttaattctctttgctctattatctttcaaattatagagaattgcttggtctagtaaattgattgcaaatatcaatgt 6942867  T
Q  131 atcacccttctcagaaagatacaatgg 157  Q
    |||||| |||||||||| | |||||||    
T  6942868 atcaccattctcagaaaaacacaatgg 6942894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 6947633 - 6947706
Alignment:
Q  32 accaccaaattttataggtacttt-aattctctttagtctattatctctccaattatagataattgcttggtct 104  Q
    ||||| ||||||| | |||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||    
T  6947633 accacaaaattttgttggtacttttaattctctttactctattatctctccaattatagagaaatgcttggtct 6947706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 6921151 - 6921267
Alignment:
Q  32 accaccaaattttataggtacttt-aattctctttagtctattatctctccaattatagataattgcttggtctccactattgattgtcaatatcagtgt 130  Q
    ||||| ||||||||| |||||||| |||| |||||  |||||||||| |||||||||||| |||||| ||||||    ||||||| |  ||||||| |||    
T  6921151 accacaaaattttattggtactttcaattatctttgctctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatatcaatgt 6921250  T
Q  131 atcacccttctcagaaa 147  Q
    |||||| ||||| ||||    
T  6921251 atcaccattctcggaaa 6921267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 6935056 - 6935170
Alignment:
Q  53 tttaattctctttagtctattatctctccaattatagataattgcttggtctccactattgattgtcaatatcagtgtatcacccttctcagaaagatac 152  Q
    |||||||||||||  | ||||||||||||||||||||| || ||||||||||     ||||||||  ||||||| ||||||||| || | |||||   ||    
T  6935056 tttaattctctttgctgtattatctctccaattatagagaaatgcttggtctggtagattgattgcaaatatcaatgtatcaccattattagaaaagcac 6935155  T
Q  153 aatggaaccaatcga 167  Q
    ||||||| |||||||    
T  6935156 aatggaatcaatcga 6935170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 17369747 - 17369711
Alignment:
Q  208 tttgaagattctgataactaattttaaggaattgagt 244  Q
    |||||||||||||||||||||||||||| ||||||||    
T  17369747 tttgaagattctgataactaattttaagaaattgagt 17369711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 17369917 - 17369849
Alignment:
Q  39 aattttataggtacttt-aattctctttagtctattatctctccaattatagataattgcttggtctcc 106  Q
    |||| |||||||| ||| |||| |||||| |||||||| |||||||||||||| |||| ||||||||||    
T  17369917 aattctataggtattttcaattttctttactctattatttctccaattatagagaatttcttggtctcc 17369849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 20770733 - 20770699
Alignment:
Q  208 tttgaagattctgataactaattttaaggaattga 242  Q
    |||||||||| ||||||||||||||||||||||||    
T  20770733 tttgaagattatgataactaattttaaggaattga 20770699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 6954320 - 6954393
Alignment:
Q  32 accaccaaattttataggtac-tttaattctctttagtctattatctctccaattatagataattgcttggtct 104  Q
    ||||||||||||||| ||||| |||||||||| ||  |||||||| | |  ||||||||| |||||||||||||    
T  6954320 accaccaaattttattggtacttttaattctcgttgctctattattttttaaattatagagaattgcttggtct 6954393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 14076891 - 14076785
Alignment:
Q  53 tttaattctctttagtctattatctctccaattatagataattgcttggtctccactattgattgtcaatatcagtgtatcacccttctcagaaagatac 152  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||   |||||||  |||||||| |||| |||| ||||| || ||| ||    
T  14076891 tttaattctctttactctattatctctccaattatagataattgcttggtttcctgaattgattcccaatatcaatgtaccacctttctcggagagacac 14076792  T
Q  153 aatggaa 159  Q
    |||||||    
T  14076791 aatggaa 14076785  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 14386919 - 14386813
Alignment:
Q  53 tttaattctctttagtctattatctctccaattatagataattgcttggtctccactattgattgtcaatatcagtgtatcacccttctcagaaagatac 152  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||   |||||||  |||||||| |||| |||| ||||| || ||| ||    
T  14386919 tttaattctctttactctattatctctccaattatagataattgcttggtttcctgaattgattcccaatatcaatgtaccacctttctcggagagacac 14386820  T
Q  153 aatggaa 159  Q
    |||||||    
T  14386819 aatggaa 14386813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 15571721 - 15571826
Alignment:
Q  53 tttaattctctttagtctattatctctccaattatagataattgcttggtctccactattgattgtcaatatcagtgtatcacccttctcagaaagatac 152  Q
    |||||||||||||| |||||||| |||||||||||| | |||| ||||||||| || ||||||||  |||||||  |||||||| |||||||||| | ||    
T  15571721 tttaattctctttactctattatatctccaattataaacaattacttggtctctacgattgattgcaaatatcacagtatcaccgttctcagaaacacac 15571820  T
Q  153 aatgga 158  Q
    ||||||    
T  15571821 aatgga 15571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 1985756 - 1985892
Alignment:
Q  32 accaccaaattttataggtacttt-aattctctttagtctattatctctccaattatagataattgcttggtctccactattgattgtcaatatcagtgt 130  Q
    ||||| ||||| ||| |||||||| |||||| | || |||||||||||||| |||||||| || ||||||||||     ||||||||  ||||||| |||    
T  1985756 accacaaaattctattggtacttttaattctttctactctattatctctcctattatagagaaatgcttggtctgttggattgattgcaaatatcaatgt 1985855  T
Q  131 atcacccttctcagaaagatacaatggaaccaatcga 167  Q
    |||||| ||||| |||| ||||||||||  |||||||    
T  1985856 atcaccattctcggaaaaatacaatggagtcaatcga 1985892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 13416712 - 13416839
Alignment:
Q  32 accaccaaattttataggtacttt-aattctctttagtctattatctctccaattatagataattgcttggtctccactattgattgtcaatatcagtgt 130  Q
    |||||||||||| || || ||||| ||||||||||| |||||||||||||| ||| |||  |||| ||||||||  || ||||||||  |||||||   |    
T  13416712 accaccaaatttgattgggacttttaattctctttactctattatctctcctattgtagtgaattacttggtctagacgattgattgcaaatatcaccat 13416811  T
Q  131 atcacccttctcagaaagatacaatgga 158  Q
    |||||| ||| |||||| | ||||||||    
T  13416812 atcaccgttcccagaaacacacaatgga 13416839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 660834 - 660870
Alignment:
Q  208 tttgaagattctgataactaattttaaggaattgagt 244  Q
    |||||||||| ||||||||||||||||||||||||||    
T  660834 tttgaagattatgataactaattttaaggaattgagt 660870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 14076761 - 14076725
Alignment:
Q  208 tttgaagattctgataactaattttaaggaattgagt 244  Q
    |||||||||||||||||||||||||||| ||||||||    
T  14076761 tttgaagattctgataactaattttaagaaattgagt 14076725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 14386789 - 14386753
Alignment:
Q  208 tttgaagattctgataactaattttaaggaattgagt 244  Q
    |||||||||||||||||||||||||||| ||||||||    
T  14386789 tttgaagattctgataactaattttaagaaattgagt 14386753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 29430988 - 29431021
Alignment:
Q  208 tttgaagattctgataactaattttaaggaattg 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  29430988 tttgaagatcctgataactaattttaaggaattg 29431021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 6864669 - 6864749
Alignment:
Q  68 tctattatctctccaattatagataattgcttggtctccactattgattgtcaatatcagtgtatcacccttctcagaaag 148  Q
    |||| |||||||||||||||||| ||||||||||| | | | |||| || ||||||  |||||||||| || ||| |||||    
T  6864669 tctactatctctccaattatagagaattgcttggttttcgcgattgtttctcaataatagtgtatcactctcctccgaaag 6864749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 15571864 - 15571916
Alignment:
Q  190 cacgaagtttataatcagtttgaagattctgataactaattttaaggaattga 242  Q
    ||||||||||||||||  ||||||||||   ||||||||||||| ||||||||    
T  15571864 cacgaagtttataatccatttgaagatttgaataactaattttatggaattga 15571916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 18514774 - 18514810
Alignment:
Q  208 tttgaagattctgataactaattttaaggaattgagt 244  Q
    |||||||||||  ||||||||||||||||||||||||    
T  18514774 tttgaagattcatataactaattttaaggaattgagt 18514810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 29867327 - 29867283
Alignment:
Q  200 ataatcagtttgaagattctgataactaattttaaggaattgagt 244  Q
    ||||||| |||||||||| || ||||||||| |||||||||||||    
T  29867327 ataatcaatttgaagattatggtaactaattctaaggaattgagt 29867283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 29874602 - 29874558
Alignment:
Q  200 ataatcagtttgaagattctgataactaattttaaggaattgagt 244  Q
    ||||||| |||||||||| ||||||||||||||||| ||| ||||    
T  29874602 ataatcaatttgaagattttgataactaattttaagtaatggagt 29874558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 7707 - 7602
Alignment:
Q  53 tttaattctctttagtctattatctctccaattatagataattgcttggtctccactattgattgtcaatatcagtgtatcacccttctcagaaagatac 152  Q
    ||||||||| |||| ||||||||||||| ||||||||| ||||||| |||||  |  |||| |||  ||||||| ||||||||| ||||| |||| | ||    
T  7707 tttaattctatttactctattatctctcaaattatagacaattgctaggtctgtatgattggttgcaaatatcaatgtatcaccattctcggaaacacac 7608  T
Q  153 aatgga 158  Q
    ||||||    
T  7607 aatgga 7602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 18964662 - 18964711
Alignment:
Q  56 aattctctttagtctattatctctccaattatagataattgcttggtctc 105  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||||||    
T  18964662 aattttctttactctattatctctccaattatagagaattgcttggtctc 18964711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 18964817 - 18964853
Alignment:
Q  208 tttgaagattctgataactaattttaaggaattgagt 244  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  18964817 tttgaagattctgataacaaattttaagaaattgagt 18964853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 53774919 - 53774887
Alignment:
Q  212 aagattctgataactaattttaaggaattgagt 244  Q
    |||||||||||||||||||||||||||||||||    
T  53774919 aagattctgataactaattttaaggaattgagt 53774887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 10460800 - 10460762
Alignment:
Q  119 caatatcagtgtatcacccttctcagaaagatacaatgg 157  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  10460800 caatatcagtgtatcaccattctcagaaagatataatgg 10460762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 10468211 - 10468173
Alignment:
Q  119 caatatcagtgtatcacccttctcagaaagatacaatgg 157  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  10468211 caatattagtgtatcaccattctcagaaagatacaatgg 10468173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 14514983 - 14514947
Alignment:
Q  208 tttgaagattctgataactaattttaaggaattgagt 244  Q
    |||||||||||  ||||||||||||||||||||||||    
T  14514983 tttgaagattcatataactaattttaaggaattgagt 14514947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 22051728 - 22051760
Alignment:
Q  200 ataatcagtttgaagattctgataactaatttt 232  Q
    ||||||| |||||||||||||||||||||||||    
T  22051728 ataatcaatttgaagattctgataactaatttt 22051760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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