View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20036_low_14 (Length: 237)
Name: NF20036_low_14
Description: NF20036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20036_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 51736521 - 51736301
Alignment:
| Q |
1 |
ctgctatgtgctatcgaaatagatctgggaaagaccacattatgaacattgcaaaaatgtctgagtcaagaaattcaatatgtgcagcccgcccaatgaa |
100 |
Q |
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| T |
51736521 |
ctgctatgtgctatcgaaatagatctgggaaagaccacattatgaacattgcaaaaatgtctgagtcaagaaattcaatatgtgcagcccgcccaatgaa |
51736422 |
T |
|
| Q |
101 |
agagttcaaattcttgccatgggcagaggcatcaaaatttacatcacatcgcatgaatactcgatgttcagaggggttggcacgtatttggtccaaacaa |
200 |
Q |
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| T |
51736421 |
agagttcaaattcttgccatgggcagaggcatcaaaatttacatcacatcgcatgaatactcgatgttcagaggggttggcacgtatttggtccaaacaa |
51736322 |
T |
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| Q |
201 |
gcattcagcatctctaggaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
51736321 |
gcattcagcatctctaggaac |
51736301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 359039 - 358829
Alignment:
| Q |
11 |
ctatcgaaatagatctgggaaagaccacattatgaacattgcaaaaatgtctgagtcaagaaattcaatatgtgcagcccgcccaatgaaagagttcaaa |
110 |
Q |
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| T |
359039 |
ctatcgaaatagttctggaaatgaccacattatgaaccttgcaaaaatgtcagactccagaaactcaatatgagcagcccgcccgatgaaagagtttaaa |
358940 |
T |
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| Q |
111 |
ttcttgccatgggcagaggcatcaaaatttacatcacatcgcatgaatactcgatgttcagaggggttggcacgtatttggtccaaacaagcattcagca |
210 |
Q |
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| T |
358939 |
ttctttccataggcagtagcatcaaaattgacatcacaacgcataaatactcgacgttcagagggattggcacggatttggtccaaacaatcattaagca |
358840 |
T |
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| Q |
211 |
tctctaggaac |
221 |
Q |
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||||||||||| |
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| T |
358839 |
tctctaggaac |
358829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 37847500 - 37847537
Alignment:
| Q |
24 |
tctgggaaagaccacattatgaacattgcaaaaatgtc |
61 |
Q |
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|||||||||||||||||||||||| |||| |||||||| |
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| T |
37847500 |
tctgggaaagaccacattatgaactttgcgaaaatgtc |
37847537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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