View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20036_low_5 (Length: 377)
Name: NF20036_low_5
Description: NF20036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20036_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 37750222 - 37749862
Alignment:
| Q |
1 |
attgaaaatgtcatgcaatctttcttcccatctatcaagaacagcagagctcatatagtcagcattaggaccatcaacaagctcatctgtcctcctgcac |
100 |
Q |
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| T |
37750222 |
attgaaaatgtcatgcaatctttcttcccatctatcaagaacagcagagctcatatagtcagcattaggaccatcaacaagctcatctgtcctcctgcac |
37750123 |
T |
|
| Q |
101 |
caaactgcaaacagagatttcaataaataagatatattttgacttacaaaactaattgcaacattgtttctatcttgatctattgtaatttcctaccata |
200 |
Q |
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| T |
37750122 |
caaactgcaaacaaagatttcaataaataagatatattttgacttacaaaactaattgcaacattgtttctatcttgatctattgtaatttcctaccata |
37750023 |
T |
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| Q |
201 |
tatagcccatatagccttctgtctttcttcggtcataagcaaagttcctgtttaagaaatgaaaatggaaattgttaaacctatggtatcaaaaagagtg |
300 |
Q |
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| T |
37750022 |
tatagcccatatagccttctgtctttcttcggtcataagcaaagttcctgtttaagaaatgaaaatggaaattgttaaacctatggtatcaaaaagagtg |
37749923 |
T |
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| Q |
301 |
caagaaattttgatataattttttaaaagaattgtcaagtttgtttacaaatcaagtttct |
361 |
Q |
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| T |
37749922 |
caagaaattttgatataattttttaaaagaattgtcaagtttgtttaccaatcaagtttct |
37749862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 2 - 309
Target Start/End: Complemental strand, 37756020 - 37755715
Alignment:
| Q |
2 |
ttgaaaatgtcatgcaatctttcttcccatctatcaagaacagcagagctcatatagtcagcattaggaccatcaacaagctcatctgtcctcctgcacc |
101 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
37756020 |
ttgaaaatgtcatgcaatctttcttcccgtctatcaagaacagcagagctcatacagtcagcattaggaccatcaacaaactcatatgtcctcctgcacc |
37755921 |
T |
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| Q |
102 |
aaactgcaaacagagatttcaataaataagatatattttgactt---acaaaactaattgcaacattgtttctatcttgatctattgtaatttcctacca |
198 |
Q |
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| T |
37755920 |
aaactgcaaataaaggtttcaataaataaaatatattttggcttgcatcaaaactaattgcaacactgtttttatctttatctgttgtaatttcttacca |
37755821 |
T |
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| Q |
199 |
tatatagcccatatagccttctgtctttcttcggtcataagcaaagttcctgtttaagaaatgaaaatggaaattgttaaacctatggtatcaaaaagag |
298 |
Q |
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| T |
37755820 |
tatatagcccatatagccttctgtctttcttcggtcataagcaaagttcttgttaaaggaatga------aaattattaaacttatggtatcaaaaaaag |
37755727 |
T |
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| Q |
299 |
-tgcaagaaatt |
309 |
Q |
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||||||||||| |
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| T |
37755726 |
atgcaagaaatt |
37755715 |
T |
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