View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20036_low_7 (Length: 366)

Name: NF20036_low_7
Description: NF20036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20036_low_7
NF20036_low_7
[»] chr3 (15 HSPs)
chr3 (10-349)||(13428749-13429088)
chr3 (12-236)||(24699102-24699325)
chr3 (12-227)||(26010796-26011014)
chr3 (18-229)||(15686823-15687035)
chr3 (10-175)||(4769734-4769899)
chr3 (12-298)||(4832557-4832846)
chr3 (13-176)||(4765731-4765900)
chr3 (12-138)||(23378488-23378615)
chr3 (13-103)||(16242979-16243069)
chr3 (12-152)||(7148734-7148881)
chr3 (10-100)||(29614633-29614724)
chr3 (18-148)||(9033528-9033665)
chr3 (60-134)||(8737234-8737308)
chr3 (60-134)||(9089472-9089546)
chr3 (12-134)||(27304425-27304547)
[»] chr4 (4 HSPs)
chr4 (12-324)||(9409194-9409509)
chr4 (12-238)||(11361550-11361777)
chr4 (13-144)||(16675086-16675218)
chr4 (41-103)||(5358040-5358102)
[»] chr7 (11 HSPs)
chr7 (10-265)||(20145740-20145996)
chr7 (12-236)||(2546869-2547090)
chr7 (10-228)||(14987111-14987328)
chr7 (10-228)||(15416722-15416939)
chr7 (12-175)||(17600552-17600713)
chr7 (7-147)||(4173474-4173615)
chr7 (17-152)||(24832404-24832546)
chr7 (10-245)||(3743328-3743569)
chr7 (12-144)||(18084284-18084416)
chr7 (18-71)||(10649265-10649318)
chr7 (255-295)||(28036972-28037012)
[»] chr2 (9 HSPs)
chr2 (12-265)||(26650767-26651022)
chr2 (12-245)||(17402671-17402905)
chr2 (12-265)||(18929165-18929418)
chr2 (12-236)||(25520438-25520662)
chr2 (12-144)||(31404072-31404205)
chr2 (20-144)||(24543870-24543994)
chr2 (193-236)||(24543756-24543799)
chr2 (22-70)||(15438036-15438085)
chr2 (22-92)||(28760652-28760724)
[»] chr8 (14 HSPs)
chr8 (12-338)||(9217929-9218258)
chr8 (12-175)||(28371053-28371216)
chr8 (65-234)||(10660926-10661095)
chr8 (12-118)||(16600579-16600685)
chr8 (12-133)||(13110204-13110325)
chr8 (12-144)||(9286366-9286498)
chr8 (12-133)||(18672143-18672261)
chr8 (12-151)||(23540260-23540406)
chr8 (12-125)||(25095056-25095170)
chr8 (161-236)||(22713804-22713880)
chr8 (45-103)||(26136184-26136242)
chr8 (196-238)||(18672343-18672385)
chr8 (12-144)||(27123622-27123752)
chr8 (172-236)||(9286547-9286611)
[»] chr1 (12 HSPs)
chr1 (12-245)||(11013870-11014106)
chr1 (10-138)||(33103021-33103149)
chr1 (14-144)||(22607874-22608003)
chr1 (12-150)||(20146168-20146312)
chr1 (10-127)||(20150473-20150590)
chr1 (12-144)||(36571695-36571826)
chr1 (162-236)||(36571866-36571940)
chr1 (12-125)||(13202104-13202217)
chr1 (12-103)||(17615299-17615390)
chr1 (161-227)||(33102920-33102986)
chr1 (196-236)||(17615146-17615186)
chr1 (72-144)||(20866221-20866293)
[»] chr5 (15 HSPs)
chr5 (12-168)||(19218021-19218177)
chr5 (12-152)||(20060804-20060951)
chr5 (10-148)||(23210147-23210293)
chr5 (12-152)||(20064504-20064651)
chr5 (12-144)||(24878356-24878488)
chr5 (12-148)||(20713175-20713319)
chr5 (12-152)||(20058675-20058822)
chr5 (12-144)||(17167301-17167433)
chr5 (10-103)||(25951315-25951407)
chr5 (40-144)||(19924024-19924128)
chr5 (12-169)||(23355604-23355761)
chr5 (12-72)||(23379414-23379474)
chr5 (161-238)||(19926892-19926969)
chr5 (12-123)||(17987487-17987599)
chr5 (116-148)||(25951260-25951292)
[»] chr6 (10 HSPs)
chr6 (18-227)||(22397602-22397811)
chr6 (12-150)||(16177248-16177395)
chr6 (10-175)||(17524808-17524973)
chr6 (12-144)||(14762958-14763090)
chr6 (12-144)||(18713709-18713841)
chr6 (12-144)||(17947891-17948023)
chr6 (12-103)||(1177254-1177349)
chr6 (12-99)||(15830026-15830113)
chr6 (22-92)||(13002834-13002906)
chr6 (193-236)||(17948094-17948137)
[»] scaffold0264 (1 HSPs)
scaffold0264 (10-180)||(20806-20976)
[»] scaffold0337 (4 HSPs)
scaffold0337 (20-144)||(17221-17344)
scaffold0337 (12-144)||(4546-4677)
scaffold0337 (166-236)||(4435-4505)
scaffold0337 (196-236)||(17110-17150)
[»] scaffold0555 (1 HSPs)
scaffold0555 (12-150)||(5707-5852)
[»] scaffold0002 (1 HSPs)
scaffold0002 (20-124)||(374172-374275)
[»] scaffold0142 (1 HSPs)
scaffold0142 (14-132)||(20553-20671)
[»] scaffold0016 (1 HSPs)
scaffold0016 (12-72)||(12991-13051)
[»] scaffold1102 (1 HSPs)
scaffold1102 (12-103)||(911-1002)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 13428749 - 13429088
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13428749 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtat 13428848  T
Q  110 tttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaacccttttctgtcgatagatattacacggtctcgtcctgttc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13428849 tttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaacccttttctgtcgatagatattacacggtctcgtcctgtcc 13428948  T
Q  210 ataaagcaacctatgaacttaatgaacacttgaaaacaaatgtataacatatcctaaaatttctgattttattctacttgtaataaccattaccagctct 309  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||  |||| ||||    
T  13428949 ataaagcaacctataaacttaatgaacacttgaaaacaaatgcataacatgtcctaagatttctgattttattctacttgtaataaccaaaaccaactct 13429048  T
Q  310 ctttatttaccaaaaacaccgataaacagtactatggact 349  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13429049 ctttatttaccaaaaacaccgataaacagtactatggact 13429088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 24699102 - 24699325
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    |||||||||||||||||||||||| || ||||||||||| | |  |||||||||| |||||||||||| ||||||| |||||| ||||||||||||||||    
T  24699102 aattctaaaacactcgaagtaccggcgcgagagaaaagaatca--aagaatgtatttaaaggatttgtcgaaccacctttatttttaatgcattgtattt 24699199  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccc-ttttctgtcgatagatattacacggtctcgtcctgttca 210  Q
    || ||||||||||| ||| ||||||||||||||||||| |||||||||||| | |||||| ||||||||||| |||||| |||||||||||||||||||     
T  24699200 tacctttcctttaagtttatgcaatttaaacttaatgcctttactttgcttatgaaaccctttttctgtcgaaagatatcacacggtctcgtcctgttcg 24699299  T
Q  211 taaagcaacctatgaacttaatgaac 236  Q
    |||| |||||||||||||| ||||||    
T  24699300 taaaacaacctatgaacttgatgaac 24699325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 26011014 - 26010796
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    |||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||| ||||||| ||||||| |||||| |||| |||||||||||    
T  26011014 aattctaaaacactcgaagtaccggcgcgagagaatagagtcataaagaatgtatgtaaatgatttgtcgaaccacctttatttttaaagcattgtattt 26010915  T
Q  112 tatctttcctttaaatttctgcaa---tttaaacttaatgcatttactttgcttttaaaacccttttctgtcgatagatattacacggtctcgtcctgtt 208  Q
    |||||||||||||| |||||||||    ||||||||||||| |||||||||||||||||| ||||||||||||| ||| |  | | ||||||||||||||    
T  26010914 tatctttcctttaagtttctgcaagttattaaacttaatgcctttactttgcttttaaaaaccttttctgtcgaaagacaccatatggtctcgtcctgtt 26010815  T
Q  209 cataaagcaacctatgaac 227  Q
    ||| |||||||||||||||    
T  26010814 cattaagcaacctatgaac 26010796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 15687035 - 15686823
Alignment:
Q  18 aaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctt 117  Q
    |||| |||||||||||||||| |||||||||||||  ||||||||||||| || |||||| | | ||||| |||||| |||||||||||||||||| |||    
T  15687035 aaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatgtatgaaatggatttttaggaccacctttatttttaatgcattgtattttacctt 15686936  T
Q  118 tcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccc-ttttctgtcgatagatattacacggtctcgtcctgttcataaagc 216  Q
    | |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| | |    ||||||||||||||||||| ||| ||    
T  15686935 tgctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaaccctttttctatcgaaacacgccacacggtctcgtcctgttcgtaacgc 15686836  T
Q  217 aacctatgaactt 229  Q
    |||||||||||||    
T  15686835 aacctatgaactt 15686823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 4769899 - 4769734
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtat 109  Q
    |||||||||||||||||||| ||||  ||  |||||||||||| ||||||||||||||||| | |||| | ||||||| ||||||  |||||||||||||    
T  4769899 ataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaagaatgtatgtaacgaatttttcgaaccacctttatttctaatgcattgtat 4769800  T
Q  110 tttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccctttt 175  Q
    ||  |||||||||||| ||| || |||||||||||||||| ||||||||||||||||| |||||||    
T  4769799 ttattctttcctttaagtttatgaaatttaaacttaatgcctttactttgcttttaaatccctttt 4769734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 4832557 - 4832846
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||||||||||||||| |  |  ||||||||||||||| | ||||||| ||| |||||||| || || ||||| |||||  ||||||||||||||||    
T  4832557 aattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaagaatatatttaaaggatctgctggaccacctttatatttaatgcattgtattt 4832656  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccc--ttttctgtcgatagatattacacggtctcgtcctgttc 209  Q
    ||  |||||||| | ||| ||||||||||||||||||  ||||| ||||||| |||||||  |||||| |||| |||  | |||| |||||||| |||||    
T  4832657 taattttcctttgagtttatgcaatttaaacttaatgtctttaccttgctttaaaaacccttttttctttcgaaagacgtcacactgtctcgtcttgttc 4832756  T
Q  210 ataaagcaacctatgaacttaatgaacactt-gaaaacaaatgtataacatatcctaaaatttctgattttattctacttgtaataacca 298  Q
     ||||| ||||||||||||  | | ||||||  |||||||||| | ||||| ||||   |||| || ||| || ||||||||||||||||    
T  4832757 gtaaagaaacctatgaactcgacggacacttcaaaaacaaatgcacaacatgtcctgggatttttggtttgatcctacttgtaataacca 4832846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 4765731 - 4765900
Alignment:
Q  13 attctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaat----gtatgtaaaggatttgttgaaccacatttattattaatgcattgta 108  Q
    ||||||||||||| || ||||   || ||||||||||||| |||||||||    ||||||||| ||||||| ||||||| |||| | |||||||||||||    
T  4765731 attctaaaacacttgatgtactagcgcgagagaaaagagtcataaagaattaatgtatgtaaatgatttgtcgaaccacctttacttttaatgcattgta 4765830  T
Q  109 ttttatctttcctttaaatttctgcaa-tttaaacttaatgcatttactttgctttt-aaaacccttttc 176  Q
     ||||| |||||||||| ||| ||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  4765831 ctttatttttcctttaagtttatgcaattttaaacttaatgcctttactttgcttttaaaaacccttttc 4765900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 23378615 - 23378488
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttg-ttgaaccacatttattattaatgcattgtatt 110  Q
    |||||||||| |||||||||| || || ||||||||||||| ||| | ||||||||||||||||||| ||||||||| |||||| |||||||| || | |    
T  23378615 aattctaaaatactcgaagtatcggcgcgagagaaaagagtcatacataatgtatgtaaaggatttgtttgaaccacctttatttttaatgcaatgcaat 23378516  T
Q  111 ttatctttcctttaaatttctgcaattt 138  Q
    ||||||||||||||| ||||| ||||||    
T  23378515 ttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 16242979 - 16243069
Alignment:
Q  13 attctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca 103  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||| ||||||| |||||| ||||||||    
T  16242979 attctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaatgtatgtaaagcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 7148881 - 7148734
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-------t 104  Q
    |||||||||| | | |||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| |||| | ||||||||       |    
T  7148881 aattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacttttacttttaatgcacttgcatt 7148782  T
Q  105 tgtattttatctttcctttaaatttctgcaatttaaacttaatgcatt 152  Q
    || | ||| ||||| ||| || ||||||||||||||||||||||||||    
T  7148781 tgcactttttcttttcttgaagtttctgcaatttaaacttaatgcatt 7148734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 29614633 - 29614724
Alignment:
Q  10 ataattctaa-aacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaat 100  Q
    |||||||||| ||||||||||||||||||   |||||||||||| ||||| |||||||||||||||||||| ||||||| |||||| |||||    
T  29614633 ataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgtaaaggatttgtcgaaccacctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 9033528 - 9033665
Alignment:
Q  18 aaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-ttgtat------t 110  Q
    ||||||||||||||| || ||  ||||||||  || | ||||||||||||||||||||||||  |||||| |||||| |||||||| ||||||      |    
T  9033528 aaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgtatgtaaaggatttgtcaaaccacctttatttttaatgcacttgtatttgcact 9033627  T
Q  111 ttatctttcctttaaatttctgcaatttaaacttaatg 148  Q
    || ||||| |||||| ||| ||||||||||||||||||    
T  9033628 ttttcttttctttaagtttatgcaatttaaacttaatg 9033665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  60 aatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttcctttaaatttctgca 134  Q
    |||| ||||||||||||||||||||||| |||||| | |||||| || | |||| |||| |||||| ||||||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  60 aatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttcctttaaatttctgca 134  Q
    |||| ||||||||||||||||||||||| |||||| | |||||| || | |||| |||| |||||| ||||||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 27304425 - 27304547
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| ||||||| ||||| || |  ||||||||||| | ||| | |||||||||| || ||||||  |||||| |||||| |||||||| || | ||    
T  27304425 aattctacaacactcaaagtatcggctcgagagaaaagaattatacaaaatgtatgtatagaatttgtcaaaccacttttatttttaatgcaatgcaatt 27304524  T
Q  112 tatctttcctttaaatttctgca 134  Q
    ||| ||| |||||| ||||||||    
T  27304525 tatattttctttaagtttctgca 27304547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 9409194 - 9409509
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    |||||||||||||||||||||||| ||  |||||||| ||| |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  9409194 aattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattt 9409293  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgctttt--aaaacccttttctgtcgatagatattacacggtctcgtcctgttc 209  Q
    |||||||||||||| ||| ||||||||||||||||| | ||||||||||||||  ||| |||||||||||||  |||   ||||||||||||||||||||    
T  9409294 tatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttttaaaaccccttttctgtcgtaagaggctacacggtctcgtcctgttc 9409393  T
Q  210 ataaagcaacctatgaacttaatgaacac-ttgaaaacaaatgtataacatatcctaaaatttctgattttattctacttgtaataaccattaccagctc 308  Q
     ||||||||||||||||||  |||||| | || |||| ||||| | ||||| ||||||| ||| |  ||| || || ||||||||||| |  |||||| |    
T  9409394 gtaaagcaacctatgaactcgatgaacgctttaaaaagaaatgcacaacatgtcctaaatttttttgtttgatccttcttgtaataacaaaaaccagccc 9409493  T
Q  309 tctttatttaccaaaa 324  Q
    || || ||||||||||    
T  9409494 tcgttgtttaccaaaa 9409509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 11361777 - 11361550
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    |||||||||||||||||  |||||||| ||| ||||||||| | |||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  11361777 aattctaaaacactcgacttaccgacgcgagggaaaagagttacaaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattt 11361678  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccctttt-ctgtcgatagatattacacggtctcgtcctgttca 210  Q
    || ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||  |||| ||||| | ||| |  |||||||||||||||||||     
T  11361677 tacctttcatttaaatttctgcaatttaaacttaatgcctttactttgcttttaaaacttttttcctgtcaaaagacaccacacggtctcgtcctgttcg 11361578  T
Q  211 taaagcaacctatgaacttaatgaacac 238  Q
     |||||||||||| ||||| ||||||||    
T  11361577 caaagcaacctataaacttgatgaacac 11361550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 16675218 - 16675086
Alignment:
Q  13 attctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgt-aaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    |||||||||||||||||||||||  | ||||||| ||||| ||| ||||||||||| ||| ||||||| ||||||| |||||| | |||||| |  | ||    
T  16675218 attctaaaacactcgaagtaccggtgcgagagaagagagttatacagaatgtatgtaaaatgatttgtcgaaccacttttattttaaatgcaatacaatt 16675119  T
Q  112 tatctttcctttaaatttctgcaatttaaactt 144  Q
    || |||| |||||  |||||||| |||||||||    
T  16675118 taccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 5358102 - 5358040
Alignment:
Q  41 agagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca 103  Q
    |||||||||||| ||| | |||||||||||| ||||||| |||| || |||||| ||||||||    
T  5358102 agagaaaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 20145996 - 20145740
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtat 109  Q
    |||||||||||||||||||||||| | || ||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  20145996 ataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtat 20145897  T
Q  110 tttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaacccttttctgtcgatagatattacacggtctcgtcctgttc 209  Q
    | || |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||    |||||||||||||| |||     
T  20145896 tctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacctttttctgtcgaaagacgccacacggtctcgtcccgttt 20145797  T
Q  210 ataaagcaacctatgaacttaatgaacacttgaaaac-aaatgtataacatatccta 265  Q
     | |||||||||| ||| |  ||||||||  |||||| ||||| |||||||||||||    
T  20145796 gttaagcaacctacgaagtcgatgaacacacgaaaacaaaatgcataacatatccta 20145740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 2547090 - 2546869
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||||||||||||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||    ||||| |||||| |||   ||||||||||    
T  2547090 aattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaaaggatttggcagaccacctttatt-tta---cattgtattt 2546995  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaacc-cttttctgtcgatagatattacacggtctcgtcctgttca 210  Q
    || ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||  ||||| ||||| |||    | |||||||| ||||||||     
T  2546994 tacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaaccttttttccgtcgaaagacgccatacggtctcatcctgttcg 2546895  T
Q  211 taaagcaacctatgaacttaatgaac 236  Q
    ||||||||||||||||||| ||||||    
T  2546894 taaagcaacctatgaacttgatgaac 2546869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 14987111 - 14987328
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgta- 108  Q
    ||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||| ||||| | ||||||| |||||| ||||||   ||||     
T  14987111 ataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgagatgtat 14987210  T
Q  109 ttttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaacccttttctgtcgatagatattacacggtctcgtcctgtt 208  Q
    |||||||||| |||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||| | || | |||    |||||||||||||| |||    
T  14987211 ttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttctttt-aaaccctttt-tttcaaaagacgccacacggtctcgtcccgtt 14987308  T
Q  209 cataaagcaacctatgaact 228  Q
    | | ||||||| ||||||||    
T  14987309 cgttaagcaacgtatgaact 14987328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 15416722 - 15416939
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgta- 108  Q
    ||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||| ||||| | ||||||| |||||| ||||||   ||||     
T  15416722 ataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgagatgtat 15416821  T
Q  109 ttttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaacccttttctgtcgatagatattacacggtctcgtcctgtt 208  Q
    |||||||||| |||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||| | || | |||    |||||||||||||| |||    
T  15416822 ttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttctttt-aaaccctttt-tttcaaaagacgccacacggtctcgtcccgtt 15416919  T
Q  209 cataaagcaacctatgaact 228  Q
    | | ||||||| ||||||||    
T  15416920 cgttaagcaacgtatgaact 15416939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 17600713 - 17600552
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    |||||||||||||||||||||||| |  ||||| ||||||| |||||||||||||||||||||||||| |||| || |||||| ||||||| |||||| |    
T  17600713 aattctaaaacactcgaagtaccggcacgagaggaaagagtcataaagaatgtatgtaaaggatttgtcgaacaacctttatttttaatgctttgtatgt 17600614  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccctttt 175  Q
    |||||||||||||| ||| || ||||||||| |  | | |||||||| ||||||||||| ||||    
T  17600613 tatctttcctttaagtttatggaatttaaacct--ttcctttacttttcttttaaaaccttttt 17600552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 4173474 - 4173615
Alignment:
Q  7 tagataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-tt 105  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| |||| |  |||||  |||||||| ||    
T  4173474 tagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaactagttttatctttaatgcactt 4173573  T
Q  106 gtattt-tatctttcctttaaatttctgcaatttaaacttaat 147  Q
    | |||| ||| ||| |||||| |||||||||||||||||||||    
T  4173574 gcatttgtat-ttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 24832546 - 24832404
Alignment:
Q  17 taaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-------ttgtat 109  Q
    |||||||||||||||| || ||  |||||||||||| ||||||||||||||||||| |||||| |||||||  ||||| ||||||||       ||||||    
T  24832546 taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccaccattatttttaatgcacttgcatttgtat 24832447  T
Q  110 tttatctttcctttaaatttctgcaatttaaacttaatgcatt 152  Q
    ||| ||||| |||||| ||||||||||||||||||||||||||    
T  24832446 tttttcttttctttaagtttctgcaatttaaacttaatgcatt 24832404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 3743569 - 3743328
Alignment:
Q  10 ataattctaaaa-cactcgaagtaccgacg-tgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgt 107  Q
    |||||||||||| ||||||||||||||  | ||| |||||||||| ||||| |||||||  ||||||||||| ||||||| |||||| ||||||| ||||    
T  3743569 ataattctaaaaacactcgaagtaccggtgctga-agaaaagagtcataaaaaatgtatacaaaggatttgtcgaaccacctttatttttaatgccttgt 3743471  T
Q  108 attttatctttcctttaaatttctgcaattt-aaactt-aatgcatttactttgcttttaaaa---cccttttctgtcgatagatattacacggtctcgt 202  Q
    | ||||| ||||||| ||  ||||||||||| |||||| ||||| |||||||| || ||||||   || |||| |||||| ||| |  |||   ||||||    
T  3743470 actttatttttccttcaagattctgcaatttcaaacttgaatgcctttactttactgttaaaaaaccctttttttgtcgaaagacaccacataatctcgt 3743371  T
Q  203 cctgttcataaagcaacctatgaacttaatgaacacttgaaaa 245  Q
    | ||||| ||||||||||||||||||  | |||| ||||||||    
T  3743370 catgttcgtaaagcaacctatgaactcgacgaacgcttgaaaa 3743328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 18084416 - 18084284
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgt-aaaggatttgttgaaccacatttattattaatgcattgtatt 110  Q
    |||||||||||||| || ||||||||||||||||||||||| ||| |  |||||||| ||| |||||||  |||||| |||||| |||||| | || | |    
T  18084416 aattctaaaacacttgaggtaccgacgtgagagaaaagagttatacaacatgtatgtaaaatgatttgtgaaaccacctttatt-ttaatgtaatgcaat 18084318  T
Q  111 ttatctttcctttaaatttctgcaatttaaactt 144  Q
    |||||||| |||||| |||||||  |||||||||    
T  18084317 ttatcttttctttaagtttctgcgttttaaactt 18084284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 10649265 - 10649318
Alignment:
Q  18 aaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaa 71  Q
    |||||||||||||||||| |  ||||||||||||| ||||||||||||||||||    
T  10649265 aaaacactcgaagtaccggcacgagagaaaagagttataaagaatgtatgtaaa 10649318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 28037012 - 28036972
Alignment:
Q  255 aacatatcctaaaatttctgattttattctacttgtaataa 295  Q
    |||||||||||| ||||||||||| || |||||||||||||    
T  28037012 aacatatcctaagatttctgatttgatcctacttgtaataa 28036972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 26651022 - 26650767
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||  |||| ||||||||||    
T  26651022 aattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttataatccattgtattt 26650923  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccc--ttttctgtcgatagatattacacggtctcgtcctgttc 209  Q
    || ||||||||||| |||||||||||||||||| |||  |||||||||||||||||||||  ||||||||||| |||    ||||||||||||| |||||    
T  26650922 tacctttcctttaagtttctgcaatttaaacttcatgtctttactttgcttttaaaacccttttttctgtcgaaagaagccacacggtctcgtcatgttc 26650823  T
Q  210 ataaagcaacctatgaacttaatgaacacttgaaaacaaatgtataacatatccta 265  Q
     |||| |||||||||||||| |||| |||   |||||||||| | ||||| |||||    
T  26650822 gtaaaacaacctatgaacttgatgagcacacaaaaacaaatgcacaacatgtccta 26650767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 17402905 - 17402671
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||||||||||| |||||||| |  ||||||||| ||| ||||||||||||||||||||||||||  |||||| |||||| ||||||||||||||||    
T  17402905 aattctaaaacactctaagtaccggcacgagagaaaaaagttataaagaatgtatgtaaaggatttgtataaccacctttatttttaatgcattgtattt 17402806  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaacc-cttttctgtcgatagatattacacggtctcgtcctgttca 210  Q
    ||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||  |||| ||| || ||| || | ||| || |||| |||||     
T  17402805 tatatttcctttaagtttctgcaatttaaacttattgcctttactttgcttttaaaaccttttttttgttgaaagacatcatacgatcccgtcttgttcg 17402706  T
Q  211 taaagcaacctatgaacttaatgaacacttgaaaa 245  Q
    ||||||||||||||||||| |||||| ||||||||    
T  17402705 taaagcaacctatgaacttgatgaacgcttgaaaa 17402671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 18929418 - 18929165
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    |||||||||||||||||||||||| |||||||||| | ||| |||||||||||||||||| ||||| | ||||||| |||||| ||||||||||||||||    
T  18929418 aattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaaccacctttatttttaatgcattgtattt 18929319  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaacccttttctgtcgatagatattacacggtctcgtcctgttcat 211  Q
    || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| | |    ||| ||| ||||||||||| |    
T  18929318 tacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacctttttatgtcgaaatacgccacagggtatcgtcctgttcgt 18929219  T
Q  212 aaagcaacctatgaacttaatgaacacttgaaaacaaatgtataacatatccta 265  Q
     |||||||||| |||||  |||||| |   |||||||||| | ||||| |||||    
T  18929218 taagcaacctacgaactcgatgaacgcacaaaaacaaatgcacaacatgtccta 18929165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 25520438 - 25520662
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    |||| |||||||||||||||  || || ||||||||||||| ||| | |||||||||||||| ||||| ||||| | |||||| |||||||| |||| ||    
T  25520438 aattataaaacactcgaagtgacggcgcgagagaaaagagtcatacataatgtatgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtt 25520537  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaacccttttctgtcgatagatattacacggtctcgtcctgttcat 211  Q
    ||||||| |||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||| | | |  | ||||||||||| ||||| |    
T  25520538 tatcttttctttaactttctgcaattttaacttaatgcctttactttgcttttaaaacctttttcggtcgaaaaacaccatacggtctcgtcttgttcgt 25520637  T
Q  212 aaagcaacctatgaacttaatgaac 236  Q
    |||| ||||||||||||| ||||||    
T  25520638 aaagaaacctatgaacttgatgaac 25520662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 31404072 - 31404205
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgt-aaaggatttgttgaaccacatttattattaatgcattgtatt 110  Q
    |||||||||||||||||||||||| || ||||||||||||| ||| ||||||||||| ||| ||||||| ||||||| |||  | |||||||| || | |    
T  31404072 aattctaaaacactcgaagtaccggcgcgagagaaaagagttatacagaatgtatgtaaaatgatttgtcgaaccaccttttattttaatgcaatgcaat 31404171  T
Q  111 ttatctttcctttaaatttctgcaatttaaactt 144  Q
    ||| |||| |||||| |||||||| |||||||||    
T  31404172 ttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 24543994 - 24543870
Alignment:
Q  20 aacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttc 119  Q
    ||||||||||||| || || ||||||||||| | ||| | ||| |||||||||||||| | ||||||| |||||| |||||||| || | ||||| ||||    
T  24543994 aacactcgaagtatcggcgcgagagaaaagatttatacataatatatgtaaaggatttctggaaccacctttatttttaatgcaatgcaatttatttttc 24543895  T
Q  120 ctttaaatttctgcaatttaaactt 144  Q
    ||  || ||| |||||||| |||||    
T  24543894 ctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 24543799 - 24543756
Alignment:
Q  193 acggtctcgtcctgttcataaagcaacctatgaacttaatgaac 236  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  24543799 acggtctcgtcctgttcattaagcaacctatgaacttgatgaac 24543756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 15438036 - 15438085
Alignment:
Q  22 cactcgaagtaccgacgtg-agagaaaagagtaataaagaatgtatgtaa 70  Q
    ||||||||||||||||||  |||||||||||| ||| |||||||||||||    
T  15438036 cactcgaagtaccgacgtctagagaaaagagtcatacagaatgtatgtaa 15438085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 28760652 - 28760724
Alignment:
Q  22 cactcgaagtaccgacgtg-agagaaaagagtaataaagaatgtatgtaaa-ggatttgttgaaccacattta 92  Q
    |||||||||||||| |||  |||||||||||| ||| ||||||||||||||  ||||||| ||||||| ||||    
T  28760652 cactcgaagtaccggcgtctagagaaaagagtcatatagaatgtatgtaaactgatttgtcgaaccaccttta 28760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 12 - 338
Target Start/End: Complemental strand, 9218258 - 9217929
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||||||||||||||||||||||| ||||||||||  | ||| |||||||||||||| ||||||| ||||||  |||||| ||||||||||||||||    
T  9218258 aattctaaaacactcgaagtaccgacgcgagagaaaag--tcatacagaatgtatgtaaatgatttgtcgaaccatctttatttttaatgcattgtattt 9218161  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccc-----ttttctgtcgatagatattacacggtctcgtcctg 206  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| ||     ||||||||||| |||  | | |||||||| || ||    
T  9218160 tatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaaaacctttttttttctgtcgaaagacgtcatacggtctcctcttg 9218061  T
Q  207 ttcataaagcaacctatgaacttaatgaacacttgaaaacaaatgtataacatatcctaaaatttctgattttattctacttgtaataaccattaccagc 306  Q
    ||| ||||||||||||||||||| |||||| ||||||||  |||| | || || || ||  ||||||| ||| ||  | || || |||||||  ||||||    
T  9218060 ttcgtaaagcaacctatgaacttgatgaacgcttgaaaaacaatgcacaatatgtcataggatttctggtttgatcatgctggttataaccaaaaccagc 9217961  T
Q  307 tctctttatttaccaaaaacaccgataaacag 338  Q
     ||  || ||||||||||||||| ||||||||    
T  9217960 ccttattgtttaccaaaaacaccaataaacag 9217929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 28371216 - 28371053
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    |||||||||||||||||||||||   ||||| ||||| ||| ||||||||||||||||||| |||||| ||||| | |||||| ||||||||||||||||    
T  28371216 aattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaaagtatttgtcgaacctcctttatttttaatgcattgtattt 28371117  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccctttt 175  Q
    ||   ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28371116 tactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaaccatttt 28371053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 10661095 - 10660926
Alignment:
Q  65 atgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgctttt 164  Q
    ||||||||||||||| ||||||| |||||| | |||||||||  ||| | ||||||||||| || |||||||||||||||||||  ||||||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  165 aaaacccttttctgtcgatagatattacacggtctcgtcctgttcataaagcaacctatgaacttaatga 234  Q
    |||||||||||||||| | |||     ||| || ||||||||||  ||||||||||||||||||| ||||    
T  10660995 aaaacccttttctgtccaaagacgccgcacagtatcgtcctgtttgtaaagcaacctatgaacttgatga 10660926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 16600685 - 16600579
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| |||||||||||||||| || ||||||| ||||| ||| | |||||| ||||||||||||| |||||||||||||| ||||||||||| | ||    
T  16600685 aattctacaacactcgaagtaccggcgcgagagaatagagttatacataatgtacgtaaaggatttgtcgaaccacatttatttttaatgcattgcaatt 16600586  T
Q  112 tatcttt 118  Q
    |||||||    
T  16600585 tatcttt 16600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 13110325 - 13110204
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| |||||||||||||||| || ||||||||||||| ||| | ||| |||||| | ||||||||||||||| |||||| |||||||| || | ||    
T  13110325 aattctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctttatttttaatgcaatgcaatt 13110226  T
Q  112 tatctttcctttaaatttctgc 133  Q
    ||||||| |||||| |||||||    
T  13110225 tatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 9286366 - 9286498
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| ||||||||||||||||  | ||||||||| ||| ||| | |||||||||||||||||||| |||| || |||||| |||||||| || | ||    
T  9286366 aattctacaacactcgaagtaccggtgcgagagaaaatagttatacaaaatgtatgtaaaggatttgtcgaactacctttatttttaatgcaatgcaatt 9286465  T
Q  112 tatctttcctttaaatttctgcaatttaaactt 144  Q
    |||||||  ||||| |||||||| ||| |||||    
T  9286466 tatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 18672143 - 18672261
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| |||||||||||||| | || ||||||||||||| ||| | |||||||||||| |||||||||||||   |||||| |||||||| |||| ||    
T  18672143 aattctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttgaacc---tttatttttaatgcaatgtaatt 18672239  T
Q  112 tatctttcctttaaatttctgc 133  Q
    ||||||| ||| || |||||||    
T  18672240 tatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 23540260 - 23540406
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-------t 104  Q
    |||||||||| |||| |||||||| |   |||||||||| | |||||||||||||||||| ||||| | ||||||| |||||| ||||||||       |    
T  23540260 aattctaaaatactcaaagtaccggctcaagagaaaagaatcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgcacttgcatt 23540359  T
Q  105 tgtattttatctttcctttaaatttctgcaatttaaacttaatgcat 151  Q
    | |||||| ||||| | |||| ||||||||||||||||||| |||||    
T  23540360 tttattttttcttttccttaagtttctgcaatttaaacttattgcat 23540406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 25095170 - 25095056
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgt-aaaggatttgttgaaccacatttattattaatgcattgtatt 110  Q
    ||||||||||||| |||||||||| || |||| |||||||| ||| |  |||||||| |||  |||||| ||||||| |||||||| |||||| || | |    
T  25095170 aattctaaaacacccgaagtaccggcgcgagataaaagagttatacatgatgtatgtaaaattatttgtcgaaccacctttattataaatgcaatgcaat 25095071  T
Q  111 ttatctttcctttaa 125  Q
    |||||||| ||||||    
T  25095070 ttatcttttctttaa 25095056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 22713804 - 22713880
Alignment:
Q  161 ttttaaaaccctttt-ctgtcgatagatattacacggtctcgtcctgttcataaagcaacctatgaacttaatgaac 236  Q
    ||||||||||||||| ||||||| ||||   | ||||||||||| |||||||||||||||||||||| || ||||||    
T  22713804 ttttaaaaccctttttctgtcgaaagatgccatacggtctcgtcttgttcataaagcaacctatgaatttgatgaac 22713880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 26136184 - 26136242
Alignment:
Q  45 aaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca 103  Q
    |||||| ||| |||||||||||||||||||||||| | ||||| |||||| ||||||||    
T  26136184 aaaagaataaaaaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 18672343 - 18672385
Alignment:
Q  196 gtctcgtcctgttcataaagcaacctatgaacttaatgaacac 238  Q
    |||||||| |||||||||||||||||||||| || ||||||||    
T  18672343 gtctcgtcttgttcataaagcaacctatgaatttgatgaacac 18672385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 27123622 - 27123752
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaa-aggatttgttgaaccacatttattattaatgcattgtatt 110  Q
    ||||||| |||||||  |||||||| | ||||||||||||| ||| | |||||||||||   ||||| | ||||||| |||||| |||||||| || | |    
T  27123622 aattctacaacactc--agtaccgatgcgagagaaaagagttatacataatgtatgtaatctgatttatcgaaccacctttatt-ttaatgcaatgcaat 27123718  T
Q  111 ttatctttcctttaaatttctgcaatttaaactt 144  Q
    ||||| ||||||||| ||| |||  |||||||||    
T  27123719 ttatcattcctttaagtttatgcgttttaaactt 27123752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 9286547 - 9286611
Alignment:
Q  172 ttttctgtcgatagatattacacggtctcgtcctgttcataaagcaacctatgaacttaatgaac 236  Q
    |||| |||||| ||| || | ||||||||||  ||||||| ||||||||||||||||| ||||||    
T  9286547 ttttttgtcgaaagacatcatacggtctcgttgtgttcattaagcaacctatgaacttgatgaac 9286611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 11013870 - 11014106
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    |||| ||||||||||||| ||||  | |||||||||||||| ||||||||| |||||||||||||||| || |||| |||||| ||||||||||||| ||    
T  11013870 aattttaaaacactcgaaataccagcttgagagaaaagagtcataaagaatatatgtaaaggatttgtcgagccacctttatttttaatgcattgtactt 11013969  T
Q  112 tatctttcctttaaatttctgcaa-tttaaacttaatgcatttactttgcttttaaaa--cccttttctgtcgatagatattacacggtctcgtcctgtt 208  Q
    ||| |||||||||| |||| | || |||||||||||||| ||||||||||||||||||  || |||||| | || |||||| | ||||||||||||||||    
T  11013970 tatttttcctttaagtttcaggaattttaaacttaatgcctttactttgcttttaaaaaccctttttctattgaaagatatcatacggtctcgtcctgtt 11014069  T
Q  209 cataaagcaacctatgaacttaatgaacacttgaaaa 245  Q
    | |||| |||||||||||||  |||||| ||||||||    
T  11014070 cgtaaaacaacctatgaactcgatgaacgcttgaaaa 11014106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 33103149 - 33103021
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| ||||||||| |||||||| || |     
T  33103149 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatatagaatgtatgtaaaggatttgtcgaactacatttatttttaatgcaatgcaa 33103050  T
Q  110 tttatctttcctttaaatttctgcaattt 138  Q
    |||||||||||||||| ||||||||||||    
T  33103049 tttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 22607874 - 22608003
Alignment:
Q  14 ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtatttta 113  Q
    ||||| |||| ||||||||||| ||  |||||||||||| ||||| |||||||||||||||| || |||||||| |||||| |||||||| |||| ||||    
T  22607874 ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaaggatctgctgaaccacctttatttttaatgcaatgtagttta 22607973  T
Q  114 tctttcctttaaatttctgcaatttaaactt 144  Q
    ||||||||||||| ||||||||||| |||||    
T  22607974 tctttcctttaaa-ttctgcaattttaactt 22608003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 20146312 - 20146168
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-------t 104  Q
    ||||||||||||||| ||||||||  | ||||||||||||| |||||| ||||||||||||||||| ||| ||||  |||||| ||||||||       |    
T  20146312 aattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgtatgtaaaggattttttggaccatctttatttttaatgcacttgcatt 20146214  T
Q  105 tgtattttatctttcctttaaatttctgcaatttaaacttaatgca 150  Q
    | ||||||  |||| |||||| ||||||||||||||||||||||||    
T  20146213 tttatttttccttttctttaagtttctgcaatttaaacttaatgca 20146168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 20150473 - 20150590
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtat 109  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||| ||| | |||| ||| |||||||||||  |||||| |||||| ||||| || | ||     
T  20150473 ataattctacaacactcgaagtaccgacgcgagagaaaaaagtcatacaaaatgcatgcaaaggatttgtcaaaccacctttatttttaatacaatataa 20150572  T
Q  110 tttatctttcctttaaat 127  Q
    ||||||||| ||||||||    
T  20150573 tttatcttttctttaaat 20150590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 36571695 - 36571826
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| ||||||||||||||   |  ||||||||||||| ||| | |||||||||||||||||||| ||||||| |||||| |||||||| || | ||    
T  36571695 aattctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaaaggatttgtcgaaccacctttatttttaatgcaatgcaatt 36571794  T
Q  112 tatctttcctttaaatttctgcaatttaaactt 144  Q
     |||||| |||||| |||||||| ||| |||||    
T  36571795 aatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 36571866 - 36571940
Alignment:
Q  162 tttaaaacccttttctgtcgatagatattacacggtctcgtcctgttcataaagcaacctatgaacttaatgaac 236  Q
    ||||||||| ||||||||||| |||  | | ||||||||||||||||||||||||||||||||||||| ||||||    
T  36571866 tttaaaacctttttctgtcgaaagacgtcatacggtctcgtcctgttcataaagcaacctatgaacttgatgaac 36571940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 13202104 - 13202217
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| |||||||||| ||||| || ||||||||| ||| ||| | |||||||||||||||||||| ||||||| |||||| ||||| ||| | | ||    
T  13202104 aattctacaacactcgaaataccggcgcgagagaaaatagttatacataatgtatgtaaaggatttgtcgaaccacctttatttttaatacatagcaatt 13202203  T
Q  112 tatctttcctttaa 125  Q
    | ||||| ||||||    
T  13202204 tttcttttctttaa 13202217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 17615390 - 17615299
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca 103  Q
    ||||||| |||||||||||||| | || |||| |||||||| | | | |||||||||||||||||||| |||| || |||||| | ||||||    
T  17615390 aattctacaacactcgaagtacaggcgggagaaaaaagagttacacataatgtatgtaaaggatttgtcgaacaacctttattttgaatgca 17615299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 33102986 - 33102920
Alignment:
Q  161 ttttaaaacccttttctgtcgatagatattacacggtctcgtcctgttcataaagcaacctatgaac 227  Q
    |||||||||| |||| |||||| |||  | | ||||||||||| ||||||| |||||||||||||||    
T  33102986 ttttaaaacctttttatgtcgaaagacgtcatacggtctcgtcttgttcattaagcaacctatgaac 33102920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 17615186 - 17615146
Alignment:
Q  196 gtctcgtcctgttcataaagcaacctatgaacttaatgaac 236  Q
    |||||||| |||||||||||||||||||||| || ||||||    
T  17615186 gtctcgtcttgttcataaagcaacctatgaatttgatgaac 17615146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  72 ggatttgttgaaccacatttattattaatgcattgtattttatctttcctttaaatttctgcaatttaaactt 144  Q
    |||||||| ||||||| |||||| ||||||||    | ||||||||| |||||| |||||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 19218021 - 19218177
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||||||||||| |||||||| || ||||||||||||  |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  19218021 aattctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattt 19218120  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaa 168  Q
    ||  |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  19218121 tacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaaa 19218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 20060951 - 20060804
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-------t 104  Q
    |||||||||||| | ||| ||||| ||  |||||||||||| ||||| |||||||||||||||||||| ||||||| |||||| ||||||||       |    
T  20060951 aattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcacttgcatt 20060852  T
Q  105 tgtattttatctttcctttaaatttctgcaatttaaacttaatgcatt 152  Q
    |||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  20060851 tgtattttttcttttctttaagtttctgcaatttaaacttaatgcatt 20060804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 23210147 - 23210293
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca------ 103  Q
    |||||||||||||||||||||||||| ||  ||||||||||||  ||||||||||||||||||||||||| ||||||| |||||| ||||||||          
T  23210147 ataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaaccacttttatttttaatgcacttgca 23210246  T
Q  104 -ttgta-ttttatctttcctttaaatttctgcaatttaaacttaatg 148  Q
     ||||| |||| ||||| |||||| |||||||||||| |||||||||    
T  23210247 tttgtacttttttcttttctttaagtttctgcaatttcaacttaatg 23210293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 20064504 - 20064651
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-------t 104  Q
    ||||||||||||||  ||||||||  |  |||||||||||| ||||| |||||||||||| ||||||||||||||| |||||| ||||||||       |    
T  20064504 aattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgtatgtaaatgatttgttgaaccacctttatttttaatgcacttgcatt 20064603  T
Q  105 tgtattttatctttcctttaaatttctgcaatttaaacttaatgcatt 152  Q
    | |||||| ||||| |||||| ||||||||||||||||||||||||||    
T  20064604 tatattttttcttttctttaagtttctgcaatttaaacttaatgcatt 20064651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 24878488 - 24878356
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| |||||||||| |||||||| ||||||||||||| |||   ||| ||||||||||||||||  |||||| |||||| |||||||| || | ||    
T  24878488 aattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaatt 24878389  T
Q  112 tatctttcctttaaatttctgcaatttaaactt 144  Q
    ||||||| |||||| |||||||  |||||||||    
T  24878388 tatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 20713319 - 20713175
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-------t 104  Q
    |||||||||||||||||| |||||| |  |||||||||||| |||||||||||||||||  |||||||||||| || |||||| ||||||||       |    
T  20713319 aattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgtatgtaacagatttgttgaacaacctttatttttaatgcacttgaatt 20713220  T
Q  105 tgta-ttttatctttcctttaaatttctgcaatttaaacttaatg 148  Q
    |||| |||| ||||| |||||| ||| ||||||||||||||||||    
T  20713219 tgtatttttttcttttctttaagtttatgcaatttaaacttaatg 20713175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 20058675 - 20058822
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-------t 104  Q
    |||||||||||| || ||||||   ||  |||||||||||| ||||||||||||||||||| |||||| ||||||| |||||| ||||||||       |    
T  20058675 aattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccacctttatttttaatgcaattgcatt 20058774  T
Q  105 tgtattttatctttcctttaaatttctgcaatttaaacttaatgcatt 152  Q
    |||||||| | |||  ||||| ||||||||||||||||||||||||||    
T  20058775 tgtattttttattttatttaagtttctgcaatttaaacttaatgcatt 20058822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 17167301 - 17167433
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| |||||  ||||||||  || ||||||||||||||||| | |||||||||||||||||||| ||||||| |||||| |||||| | || | ||    
T  17167301 aattctacaacaccagaagtaccagcgcgagagaaaagagtaatacaaaatgtatgtaaaggatttgtcgaaccacctttatttttaatgtaatgcaatt 17167400  T
Q  112 tatctttcctttaaatttctgcaatttaaactt 144  Q
    ||||||| |||||| ||||| || ||| |||||    
T  17167401 tatcttttctttaagtttctacacttttaactt 17167433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 25951407 - 25951315
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca 103  Q
    ||||||||||||||||| ||||||||||  ||||||||||||| |||||||||||||||||| ||||||| ||||||  |||| | ||||||||    
T  25951407 ataattctaaaacactcaaagtaccgaca-gagagaaaagagtcataaagaatgtatgtaaaagatttgtcgaaccaattttactcttaatgca 25951315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 19924024 - 19924128
Alignment:
Q  40 gagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttcctttaaatttctgcaattta 139  Q
    ||||||||||||| ||| ||||||||| |||| ||||||| ||||||| |||||| |||||||| |||| ||||||||| |||||| ||| |||| |||     
T  19924024 gagagaaaagagttatacagaatgtatataaaagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtttatgcactttt 19924123  T
Q  140 aactt 144  Q
    |||||    
T  19924124 aactt 19924128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 23355761 - 23355604
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| |||||| ||||||||| ||| || ||||| ||| ||| | ||| |||||||| ||||| |   ||||| |||| | |||||||| || | ||    
T  23355761 aattctagaacacttgaagtaccggcgttagggaaaatagtcatacaaaatatatgtaaatgatttttcagaccacctttacttttaatgcaatgcaatt 23355662  T
Q  112 tatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaac 169  Q
    ||||||| |||||  |||||||||||| ||||| || | |||||||||| ||||||||    
T  23355661 tatcttttctttatgtttctgcaattttaactttattcctttactttgcatttaaaac 23355604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 23379414 - 23379474
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaag 72  Q
    ||||||||||||||||||||||   || ||||||||||||| |||||||||||||||||||    
T  23379414 aattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaaag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 19926892 - 19926969
Alignment:
Q  161 ttttaaaacccttttctgtcgatagatattacacggtctcgtcctgttcataaagcaacctatgaacttaatgaacac 238  Q
    |||||||||| ||||||||||| |||    | ||||| ||||| |||||||||||||||||||||| || ||||||||    
T  19926892 ttttaaaacctttttctgtcgaaagactccatacggtttcgtcttgttcataaagcaacctatgaatttgatgaacac 19926969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 17987599 - 17987487
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgt-gagagaaaagagtaataaagaatgtatgta-aaggatttgttgaaccacatttattattaatgcattgtat 109  Q
    ||||||||||||||| || |||||||||  || |||| |||| ||| |||||||||||| |  ||||||| | ||||| |||||| |||||||| || ||    
T  17987599 aattctaaaacactcaaactaccgacgtctagggaaacgagttatacagaatgtatgtagactgatttgtag-accacctttatttttaatgcaatgcat 17987501  T
Q  110 tttatctttccttt 123  Q
    |||| |||||||||    
T  17987500 tttacctttccttt 17987487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 25951292 - 25951260
Alignment:
Q  116 tttcctttaaatttctgcaatttaaacttaatg 148  Q
    |||||||||| ||||||||||||||||||||||    
T  25951292 tttcctttaagtttctgcaatttaaacttaatg 25951260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 22397602 - 22397811
Alignment:
Q  18 aaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctt 117  Q
    |||||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||||| |||| || |||||| |||||||||||||||||| |||    
T  22397602 aaaacactcgaagtaccggcgcgagagaaaatagtcataaagaatgtatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctt 22397701  T
Q  118 tcctttaaa-tttctgcaatttaaacttaatgcatttactttgcttttaaaacccttttct-gtcgatagatattacacggtctcgtcctgttcataaag 215  Q
    |||||| || ||||||||||||||||||||||||   ||||| ||||||||||| |||| | ||||| |||    ||||||||||||||||||| ||| |    
T  22397702 tccttttaagtttctgcaatttaaacttaatgcag--acttttcttttaaaaccttttttttgtcgaaagacgccacacggtctcgtcctgttcgtaacg 22397799  T
Q  216 caacctatgaac 227  Q
    ||||||||||||    
T  22397800 caacctatgaac 22397811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 16177395 - 16177248
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-ttg---- 106  Q
    ||||||||||||||||||||||| || | |||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||||| |||        
T  16177395 aattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaaaggatttttcgaaccacatttatttttaatgcacttgcatc 16177296  T
Q  107 ----tattttatctttcctttaaatttctgcaatttaaacttaatgca 150  Q
        | |||| ||||| |||||| ||||||||||||||||||||||||    
T  16177295 tgcattttttttcttttctttaagtttctgcaatttaaacttaatgca 16177248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 17524973 - 17524808
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtat 109  Q
    |||||||||||||||||||||| | | |||||||||||||||| ||||||||||||| ||||||| |||| | || || |||||| |||||||||| ||     
T  17524973 ataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggacaacctttatttttaatgcattataa 17524875  T
Q  110 tttatctttcctttaaatttctgcaa-tttaaacttaatgcatttactttgcttttaaaaccctttt 175  Q
    ||||| ||| |||||| ||||| ||| |||||| ||||| | ||||||||| |||||||| ||||||    
T  17524874 tttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaaaacctttt 17524808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 14762958 - 14763090
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| | |||||||||||| |||  ||||||||||||| ||| ||||||||||||||||| || | ||||||| |||||| |||||||| || | ||    
T  14762958 aattctacatcactcgaagtactgacacgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctttatttttaatgcaatgcaatt 14763057  T
Q  112 tatctttcctttaaatttctgcaatttaaactt 144  Q
    ||||||| |||||| |||||||| ||| |||||    
T  14763058 tatcttttctttaagtttctgcacttttaactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 18713841 - 18713709
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| ||||||| |||||||| |  ||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||| ||| || | ||    
T  18713841 aattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaatt 18713742  T
Q  112 tatctttcctttaaatttctgcaatttaaactt 144  Q
    |||| || |||||| |||||||| ||| |||||    
T  18713741 tatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 17947891 - 17948023
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| |||| |||||||| || ||  |||| ||||||| ||| | |||||||||||||||||||| ||||||| |||||| ||||| || || | ||    
T  17947891 aattctacaacattcgaagtaacggcgcaagaggaaagagttatataaaatgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaatt 17947990  T
Q  112 tatctttcctttaaatttctgcaatttaaactt 144  Q
    |||||||||||||| ||| |||| ||| |||||    
T  17947991 tatctttcctttaagtttatgcatttttaactt 17948023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 1177254 - 1177349
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaaga----atgtatgtaaaggatttgttgaaccacatttattattaatgca 103  Q
    ||||||||||||||||||||||   || ||||||||||||| |||||||    ||||||||||||||||||| ||||||| |||||| ||||||||    
T  1177254 aattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatacatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 1177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 15830113 - 15830026
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaa 99  Q
    ||||||||||||||| ||||| |   ||||||||||||||| ||||| |||||||||||| ||||||| ||| ||| |||||| ||||    
T  15830113 aattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaatcacttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 13002834 - 13002906
Alignment:
Q  22 cactcgaagtaccgacgtg-agagaaaagagtaataaagaatgtatgtaaa-ggatttgttgaaccacattta 92  Q
    ||||||||||||||||||  |||||||||||| ||| ||||||||||||||  ||||||| ||||||| ||||    
T  13002834 cactcgaagtaccgacgtctagagaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccaccttta 13002906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 17948094 - 17948137
Alignment:
Q  193 acggtctcgtcctgttcataaagcaacctatgaacttaatgaac 236  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||    
T  17948094 acggtctcgtcctgttcattaagcgacctatgaacttgatgaac 17948137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 20976 - 20806
Alignment:
Q  10 ataattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtat 109  Q
    |||||||||||||||| |||||||  ||  ||||||||||||| ||||||||||||||||||| |||||| ||||||| |||||| | ||||||||| ||    
T  20976 ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaaccacctttattttaaatgcattgcat 20877  T
Q  110 tttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaacccttttctgtc 180  Q
    ||| |||||||||||| |||||||| |||||||||||||||||||   | ||||||||||| |||||||||    
T  20876 tttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacctttttctgtc 20806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 17344 - 17221
Alignment:
Q  20 aacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttc 119  Q
    ||||||||| |||||| || ||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||| ||| || | |||||| ||     
T  17344 aacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaatttatcattt 17246  T
Q  120 ctttaaatttctgcaatttaaactt 144  Q
    |||||| |||||||| ||| |||||    
T  17245 ctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 4677 - 4546
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattt 111  Q
    ||||||| |||||| || |||||| || ||||||||||||| ||| |||||| || |||| ||||||| ||||||| |||||| |||| ||| || | ||    
T  4677 aattctacaacacttga-gtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaaccacctttatttttaaagcaatgcaatt 4579  T
Q  112 tatctttcctttaaatttctgcaatttaaactt 144  Q
    |||  || |||||| |||||||| ||| |||||    
T  4578 tattatttctttaagtttctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 4505 - 4435
Alignment:
Q  166 aaacccttttctgtcgatagatattacacggtctcgtcctgttcataaagcaacctatgaacttaatgaac 236  Q
    ||||| ||||||||||| |||| | |  |||||||||| |||||||||||||||||||||| || ||||||    
T  4505 aaacctttttctgtcgaaagatgtcattcggtctcgtcttgttcataaagcaacctatgaatttgatgaac 4435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 17150 - 17110
Alignment:
Q  196 gtctcgtcctgttcataaagcaacctatgaacttaatgaac 236  Q
    |||||||| |||||||||||||||||||||| || ||||||    
T  17150 gtctcgtcttgttcataaagcaacctatgaatttgatgaac 17110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 5707 - 5852
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgca-ttg---- 106  Q
    ||||||||||| || |||||||||||  |||| |||||||| |||| |||||||||||||| |||||| | ||||| |||||| |||||||| |||        
T  5707 aattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgtatgtaaagaatttgtcggaccacctttatttttaatgcacttgcatt 5806  T
Q  107 --tattttatctttcctttaaatttctgcaatttaaacttaatgca 150  Q
      ||||||  |||| |||||| ||| ||||||||||||||||||||    
T  5807 gttatttttccttttctttaagtttttgcaatttaaacttaatgca 5852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 374172 - 374275
Alignment:
Q  20 aacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttc 119  Q
    ||||||| |||||| | || |||||||||||||| || | ||||||||||||| |||||| ||||||| |||||| |||||||| || | ||||||||||    
T  374172 aacactcaaagtacaggcgcgagagaaaagagta-tacaaaatgtatgtaaagtatttgtcgaaccacctttatttttaatgcaatgcaatttatctttc 374270  T
Q  120 cttta 124  Q
    |||||    
T  374271 cttta 374275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 20671 - 20553
Alignment:
Q  14 ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgt-aaaggatttgttgaaccacatttattattaatgcattgtatttt 112  Q
    |||||||||||||||||||||| || ||||||||||||| ||| | ||||||||| |||  ||||||  |||||| |||||| |||||||| |||| |||    
T  20671 ttctaaaacactcgaagtaccggcgcgagagaaaagagttatacataatgtatgtgaaataatttgtcaaaccacctttatt-ttaatgcaatgtaattt 20573  T
Q  113 atctttcctttaaatttctg 132  Q
    || ||| |||||| ||||||    
T  20572 atgttttctttaactttctg 20553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 13051 - 12991
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaag 72  Q
    ||||||||||||||||||||||   || ||||||||||||| |||||||||||||||||||    
T  13051 aattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaaag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 911 - 1002
Alignment:
Q  12 aattctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgt-aaaggatttgttgaaccacatttattattaatgca 103  Q
    ||||| |||||||||||||||||| || |||| | |||||| ||| | ||||||||| ||| |||||||||||| || |||||| ||||||||    
T  911 aattccaaaacactcgaagtaccggcgcgagaaagaagagttatacataatgtatgtaaaatgatttgttgaacaacctttatt-ttaatgca 1002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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