View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20037_high_15 (Length: 310)

Name: NF20037_high_15
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20037_high_15
NF20037_high_15
[»] chr1 (3 HSPs)
chr1 (103-279)||(42169655-42169831)
chr1 (5-105)||(42169472-42169572)
chr1 (128-185)||(48064182-48064241)
[»] chr7 (1 HSPs)
chr7 (156-185)||(5620261-5620290)
[»] chr4 (2 HSPs)
chr4 (131-185)||(17823012-17823068)
chr4 (156-184)||(30090132-30090160)
[»] chr5 (1 HSPs)
chr5 (157-185)||(14955597-14955625)
[»] chr3 (1 HSPs)
chr3 (156-184)||(37308232-37308260)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 103 - 279
Target Start/End: Original strand, 42169655 - 42169831
Alignment:
Q  103 agaaataacttatagataagtgaatatcatgataagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat 202  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169655 agaaataacttatagataagtgaatatcatgatgagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat 42169754  T
Q  203 ctctaacagaaattacattttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgt 279  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169755 ctctaacagaaattacatgttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgt 42169831  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 42169472 - 42169572
Alignment:
Q  5 attatttgttggtaattaatactactttccaaatttcatttttgaattcacttattcaagcttatctagtgacataagcacttttataaccgtttatgag 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169472 attatttgttggtaattaatattactttccaaatttcatttttgaattcacttattcaagcttatctagtgacataagcacttttataaccgtttatgag 42169571  T
Q  105 a 105  Q
    |    
T  42169572 a 42169572  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 48064241 - 48064182
Alignment:
Q  128 atcatgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta 185  Q
    |||||||||||  |||||||||| ||  || |||||||||||||||||||||| ||||||    
T  48064241 atcatgataagggcttatgctataagctgcaaattaagttgtttatccaaacatggccta 48064182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 5620261 - 5620290
Alignment:
Q  156 taattaagttgtttatccaaacagggccta 185  Q
    ||||||||||||||||||||||||||||||    
T  5620261 taattaagttgtttatccaaacagggccta 5620290  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 17823068 - 17823012
Alignment:
Q  131 atgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta 185  Q
    |||||||| ||||||||||||||  || ||||||| |||||||||||||| ||||||    
T  17823068 atgataagcccttatgctatgagctgcaaattaagctgtttatccaaacaaggccta 17823012  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 30090160 - 30090132
Alignment:
Q  156 taattaagttgtttatccaaacagggcct 184  Q
    |||||||||||||||||||||||||||||    
T  30090160 taattaagttgtttatccaaacagggcct 30090132  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 14955625 - 14955597
Alignment:
Q  157 aattaagttgtttatccaaacagggccta 185  Q
    |||||||||||||||||||||||||||||    
T  14955625 aattaagttgtttatccaaacagggccta 14955597  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 37308232 - 37308260
Alignment:
Q  156 taattaagttgtttatccaaacagggcct 184  Q
    |||||||||||||||||||||||||||||    
T  37308232 taattaagttgtttatccaaacagggcct 37308260  T

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