View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_high_17 (Length: 305)
Name: NF20037_high_17
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 1670011 - 1669739
Alignment:
| Q |
15 |
gacacgactaggaattttcaaacgaggttgagcacgactcataaaacctttaaatccaacaccttcaacatgtttaaagggaagttcatcaatgataatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1670011 |
gacacgactaggaattttcaaacgaggttgagcacgactcataaaacctttaaatccaacaccttcaacatgtttaaagggaagttcatcaatgataatc |
1669912 |
T |
|
| Q |
115 |
atcttggcaagctccattctacactctaattgattaaattcaacaagcttaaaagaaacattactatcaccctctacgtgcttcccaagtacaagggttt |
214 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1669911 |
atcttagcaagctccattctacactctaattgattaaattcaacaagcttaaaagagacattactatcaccctctacttgcttcccaagtacaagggttt |
1669812 |
T |
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| Q |
215 |
tttgtgccctgtcaattaccctgtttggattctttgggcatttcttatagtgtttattgagatttgtggttcc |
287 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1669811 |
tttgtgccttgtcaattaccctgtttggattcttggggcatttcttatagtgtttattgagatttgtggttcc |
1669739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 44272468 - 44272740
Alignment:
| Q |
15 |
gacacgactaggaattttcaaacgaggttgagcacgactcataaaacctttaaatccaacaccttcaacatgtttaaagggaagttcatcaatgataatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44272468 |
gacacgactaggaattttcaaacgaggttgagcacgactcataaaacctttaaatccaacaccttcaacatgtttaaagggaagttcatcaatgataatc |
44272567 |
T |
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| Q |
115 |
atcttggcaagctccattctacactctaattgattaaattcaacaagcttaaaagaaacattactatcaccctctacgtgcttcccaagtacaagggttt |
214 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44272568 |
atcttagcaagctccattctacactctaattgattaaattcaacaagcttaaaagagacattactatcaccctctacttgcttcccaagtacaagggttt |
44272667 |
T |
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| Q |
215 |
tttgtgccctgtcaattaccctgtttggattctttgggcatttcttatagtgtttattgagatttgtggttcc |
287 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44272668 |
tttgtgccttgtcaattaccctgtttggattcttggggcatttcttatagtgtttattgagatttgtggttcc |
44272740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 26073691 - 26073964
Alignment:
| Q |
15 |
gacacgactaggaattttcaaacgaggttgagcacgactcataaaacctttaaatccaacaccttcaacatgtttaaagggaagttcatcaatgataatc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26073691 |
gacacgactaggaattttcaaacgaggttgagcacgactcataaaacctttaaatccaacaccttcaacatgtttaaagggaagttcatcaatgataatc |
26073790 |
T |
|
| Q |
115 |
atcttggcaagctccattctacactctaattgattaaattcaacaagcttaaaagaaacattactatcaccctctacgtgcttcccaagtacaaggg-tt |
213 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| || |
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| T |
26073791 |
atcttagcaagctccattctacactctaattgattaaattcaacaagtttaaaagagacattactatcaccctctacttgcttcccaagtacaagggttt |
26073890 |
T |
|
| Q |
214 |
ttttgtgccctgtcaattaccctgtttggattctttgggcatttcttatagtgtttattgagatttgtggttcc |
287 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26073891 |
ttttgtgccttgtcaattaccctgtttggattcttggggcatttcttatagtgtttattgagatttgtggttcc |
26073964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 20483785 - 20483728
Alignment:
| Q |
78 |
ttcaacatgtttaaagggaagttcatcaatgataatcatcttggcaagctccattcta |
135 |
Q |
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||||||||||||||| ||||| |||||||| |||||||| || ||||| |||| |||| |
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| T |
20483785 |
ttcaacatgtttaaaaggaagctcatcaataataatcatttttgcaagttccaatcta |
20483728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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