View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20037_high_25 (Length: 244)
Name: NF20037_high_25
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 39943233 - 39943022
Alignment:
| Q |
18 |
aaaagaaaaggaactaaaacacatattaatatattttataacagcaatattttctaaaaagttgctaactcatcatcctatcaccataattgagaacata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39943233 |
aaaagaaaaggaactaaaacacatattaatctattttataacagcaatattttctaaaaagttgctaactcatcatcctatcaccataattgagaacata |
39943134 |
T |
|
| Q |
118 |
gaggtttcagttgcttttatactgtatagtttataatccaaatgcatcctttgttaattccttttttaattctatcattaattaaataaaggcgggtcac |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39943133 |
gaggtttcggttgcttttatactgtatagtttataatccaaatgcatcctttgttaattccttttttaattctatcattaataaaataaaggcgggtcac |
39943034 |
T |
|
| Q |
218 |
ttacttcctttg |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39943033 |
ttacttcctttg |
39943022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 28739712 - 28739860
Alignment:
| Q |
18 |
aaaagaaaaggaactaaaacacatattaatatattttataacagcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacat |
116 |
Q |
| |
|
|||||||||||| |||||| |||||||||| |||||||| | ||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
28739712 |
aaaagaaaaggagctaaaatacatattaatctattttatcaaagcaatattatctaaaaaagttggcaactcatcatgctatcaccataattgagaacat |
28739811 |
T |
|
| Q |
117 |
agaggtttcagtt-------gcttttatactgtatagtttataatccaa |
158 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
28739812 |
agaggtttcagttttggtcaacttttatattgtatagtttataatccaa |
28739860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 28749654 - 28749802
Alignment:
| Q |
18 |
aaaagaaaaggaactaaaacacatattaatatattttataacagcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacat |
116 |
Q |
| |
|
|||||||||||| |||||| |||||||||| |||||||| | ||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
28749654 |
aaaagaaaaggagctaaaatacatattaatctattttatcaaagcaatattatctaaaaaagttggcaactcatcatgctatcaccataattgagaacat |
28749753 |
T |
|
| Q |
117 |
agaggtttcagtt-------gcttttatactgtatagtttataatccaa |
158 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
28749754 |
agaggtttcagttttggtcaacttttatattgtatagtttataatccaa |
28749802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 28753667 - 28753815
Alignment:
| Q |
18 |
aaaagaaaaggaactaaaacacatattaatatattttataacagcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacat |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| | ||||||||| |||||||| |||| |||||||||| |||||||||||||| ||||||| |
|
|
| T |
28753667 |
aaaagaaaaggaactaaaatacatattaatctattttatcaaagcaatattatctaaaaaagttggcaactcatcatgctatcaccataattaagaacat |
28753766 |
T |
|
| Q |
117 |
agaggtttcagtt-------gcttttatactgtatagtttataatccaa |
158 |
Q |
| |
|
||||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
28753767 |
agaggtttcagtttcggtcagcttttatattgtgtagtttataatccaa |
28753815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University