View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_high_26 (Length: 240)
Name: NF20037_high_26
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 40121210 - 40120982
Alignment:
| Q |
1 |
ttaatgttatgttgaaataaacatttaggtata----gatatgacgaatattaatgttgtaagtgtatgggcaataaatatgaggacaataataattgat |
96 |
Q |
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| T |
40121210 |
ttaatgttatgttgagatatacatttaggtatatatagatatgacgaatattaatgttgtaagtgtatgggcaataaatatgaggacaataataattgat |
40121111 |
T |
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| Q |
97 |
gagtgtggaattgaatttcaaagaaggctaacgacctaagtgtgtgaggcagctgaggaatgagaagaaattggaacctttcttttgtgtttgaccgtct |
196 |
Q |
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| T |
40121110 |
gagtgtggaattgaatttcaacaaaggctaacgacctaagtgtgtgaggcagctgaggaatgagaagaaattggaacctttcttttgtgtttgaccgtct |
40121011 |
T |
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| Q |
197 |
gctaatcgcgatatatacatgtaacggca |
225 |
Q |
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| T |
40121010 |
gctaatcgcgatatatacatgtaacggca |
40120982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 40124835 - 40124703
Alignment:
| Q |
61 |
gtatgggcaataaatatgaggacaataa-taattgatgagtgtggaattgaatttcaaagaaggctaacgacctaagtgtgtgaggcagctgaggaatga |
159 |
Q |
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| T |
40124835 |
gtatgagcaataaatatgaaggaaataaataattcaagagtgtggagttgaatttcaacaaaggctaacgacctaaat------agaatatgaggaatta |
40124742 |
T |
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| Q |
160 |
gaagaaattggaacctttcttttgtgt-ttgaccgtctgc |
198 |
Q |
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| T |
40124741 |
gaagaaattggaacctttctttt-tgtcttgaccgtctgc |
40124703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 40092306 - 40092254
Alignment:
| Q |
86 |
taataattgatgagtgtggaattgaatttcaaagaaggctaacgacctaagtg |
138 |
Q |
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| T |
40092306 |
taataattgaagattgtggaattaaatttcaattaaggctgacgacctaagtg |
40092254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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