View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20037_high_27 (Length: 238)
Name: NF20037_high_27
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_high_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40720083 - 40720301
Alignment:
| Q |
1 |
ttagactttaaaaaattgttttgccttttcaaaaaagttatgtcgcaatannnnnnnngatgatgtgttatgtcacaannnnnnnnnnnnataagacagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
40720083 |
ttagactttaaaaaattgttttgccttttcaaaaaagttatgtcacaatattttttttgatgatgtgttatgtcaca--tttttttttttataagacagt |
40720180 |
T |
|
| Q |
101 |
attgtttcttcaataaattcctcacagagatactaaatcattctgtattttacaatgtcacgctatttatttcttaaaatttattcacacattaaaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40720181 |
attgtttcttcaataaattcctcacagagatactaaatcattctgtattttacaatgtcacgctatttatttcttaaaatttattcacacattaaaagtg |
40720280 |
T |
|
| Q |
201 |
aacaaatacttgtaaccctaa |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
40720281 |
aacaaatacttgtaaccctaa |
40720301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University