View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20037_high_33 (Length: 202)
Name: NF20037_high_33
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_high_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 35157016 - 35156843
Alignment:
| Q |
14 |
ataatacttctcaagttatcatatatttt-cattataaagtctcaatgcttaaattatatatataaaaaacagtggcacattttggtctgtggtatagtt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35157016 |
ataatacttctcaagttatcatatatttttcattataaagtctcaatgcttaaattatatatataaaaaacagtggcacattttggtctgtggtatagtt |
35156917 |
T |
|
| Q |
113 |
aattatttgactagaagagaaaagtgttattatattgttgcttgataattgattaataaaataaaggtgataag |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35156916 |
aattatttgactagaagagaaaagtgttattatattgttgcttgataattgattaataaaataaaggtgataag |
35156843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University