View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_high_5 (Length: 594)
Name: NF20037_high_5
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 33287077 - 33286698
Alignment:
| Q |
1 |
ggttgctcctttctttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatg |
100 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33287077 |
ggttgctccttcctttcatctttgctctcaccttgagattcataaagttgctggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatg |
33286978 |
T |
|
| Q |
101 |
gaagtgtttattacctacaagtgttgccatgatgaggataagacttattaatggtgagcattagcattggagtgttgctatgtgttatgttcaattgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33286977 |
gaagtgtttattacctacaagtgttgccatgatgaggataagacttattaatggtgagcattagcattggagtgttgctatgtgttatgttcaattgttg |
33286878 |
T |
|
| Q |
201 |
cattttcttctgagtttcagtttatgtaccccttatgggatgtagccatgagtcctgcattattgttgatcacagttagatcatgaatgcaactagaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33286877 |
cattttcttctgagtttcagtttatgtaccccttatgggatgtagccatgagtcctgcattattgttgatcacagtaagatcatgaatgcaactagaata |
33286778 |
T |
|
| Q |
301 |
aggctatttgttaaatttgcttattttgctgtatgaataataaaatgttattttaacctaaagatttcactttttagatt |
380 |
Q |
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| T |
33286777 |
aggctatttgttaaatttgcttattttgctgtatgaataataaaatgttattttaacctaaagatttcacttttgagatt |
33286698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 495 - 582
Target Start/End: Complemental strand, 33286593 - 33286505
Alignment:
| Q |
495 |
tctccaaataaaatcaagtcttaccccgtcaaatgatatcagttacatgaatcaaattacgtcattatt-ttttatcttgtatcatatt |
582 |
Q |
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| T |
33286593 |
tctccaaataaaatcaagtcttacctcgtcaaatgatatcagttacatgaatcaaattacgtcattatttttttatcatgtatcatatt |
33286505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 33286674 - 33286598
Alignment:
| Q |
378 |
attacctttcaaattttctaatggctattttagaaaaagaatttaataaagatgtattgaatatgtaacattattta |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33286674 |
attacctttcaaattttctaatggctattttagaaaaagaatttaataaagatgtattgactatgtaacattattta |
33286598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 33141043 - 33141158
Alignment:
| Q |
15 |
ttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattac |
114 |
Q |
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||||| ||||||||| ||||||||||| ||| |||| ||| ||||| ||||||||| | |||||||||||||||| |||| ||||||||||||||||| |
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| T |
33141043 |
ttcatatttgctctcaccttgagattcctaatgttgctgggaaaattccagattttatcgagtgtccagattgtcaccgcacaatggaagtgtttattag |
33141142 |
T |
|
| Q |
115 |
ctacaagtgttgccat |
130 |
Q |
| |
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|||||||||||||||| |
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| T |
33141143 |
ctacaagtgttgccat |
33141158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 33159663 - 33159778
Alignment:
| Q |
15 |
ttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattac |
114 |
Q |
| |
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||||| ||||||||| ||||||||||| ||| |||||||||||||||||||| ||| || ||||||||||||||| |||| ||||||||||| ||| | |
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| T |
33159663 |
ttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccagactttattaagtgtccagattgtcaccgcacaatggaagtgtatatcag |
33159762 |
T |
|
| Q |
115 |
ctacaagtgttgccat |
130 |
Q |
| |
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||||||||| |||||| |
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| T |
33159763 |
ctacaagtgctgccat |
33159778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 33182507 - 33182622
Alignment:
| Q |
15 |
ttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattac |
114 |
Q |
| |
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||||| ||||||||| ||||||||||| ||| |||||||||||||||||||| ||| || ||||||||||||||| |||| ||||||||||| ||| | |
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| T |
33182507 |
ttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccagactttattaagtgtccagattgtcaccgcacaatggaagtgtatatcag |
33182606 |
T |
|
| Q |
115 |
ctacaagtgttgccat |
130 |
Q |
| |
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||||||||| |||||| |
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| T |
33182607 |
ctacaagtgctgccat |
33182622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 33141318 - 33141389
Alignment:
| Q |
240 |
atgtagccatgagtcctgcattattgttgatcacagttagatcatgaatgcaactagaataaggctatttgt |
311 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
33141318 |
atgtagccatgagtcttgcattatcgttgatcacagtgagatcacaaatgcaactagaataaggctatttgt |
33141389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 33182746 - 33182838
Alignment:
| Q |
221 |
tttatgtaccccttatgggatgtagccatgagtcctgcattattgttgatcacagttagatcatgaatgcaactagaataaggctatttgtta |
313 |
Q |
| |
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||||||||||||| || |||||||||| ||||| ||||||||||||||||| ||| |||||| ||||||||||| || |||||| ||||||| |
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| T |
33182746 |
tttatgtacccctcgtgtgatgtagccaagagtcgtgcattattgttgatcatagtaagatcacgaatgcaactaaaagaaggctgtttgtta |
33182838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 33261479 - 33261421
Alignment:
| Q |
378 |
attacctttcaaattttctaatggctattttagaaaaagaatttaataaagatgtattg |
436 |
Q |
| |
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||||||| ||| ||||| |||||||||||||| ||||| ||||||||||||| |||||| |
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|
| T |
33261479 |
attacctgtcacattttttaatggctattttacaaaaataatttaataaagacgtattg |
33261421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 33281638 - 33281580
Alignment:
| Q |
378 |
attacctttcaaattttctaatggctattttagaaaaagaatttaataaagatgtattg |
436 |
Q |
| |
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||||||| ||| ||||| |||||||||||||| ||||| ||||||||||||| |||||| |
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|
| T |
33281638 |
attacctgtcacattttttaatggctattttacaaaaataatttaataaagacgtattg |
33281580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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