View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_low_1 (Length: 972)
Name: NF20037_low_1
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 899; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 899; E-Value: 0
Query Start/End: Original strand, 1 - 957
Target Start/End: Complemental strand, 36263780 - 36262821
Alignment:
| Q |
1 |
aatatatatggactcacaaacctcactgcagggctcaatatgcatgttccactcaggtgtgcttgtcctacctccaagtaaattgaaaatggattcaagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36263780 |
aatatatatggactcacaaacctcactgcagggctcaatatgcatgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaagt |
36263681 |
T |
|
| Q |
101 |
atattcttacatacctggtctccgaaggagaatatcctgaacttattgctgagatttttggggttgattcacagagcgtcttggatgcaaacaagcttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36263680 |
atattcttacatacctggtctccgaaggagaatatcctgaacttattgctgagatttttggggttgattcacagagcgtcttggatgcaaacaagcttat |
36263581 |
T |
|
| Q |
201 |
tgaggatcaagttatcttctacttcactccattgatggtgcctctaaaagacaagccacctaccaagatacaaaggacactaccgccaccatcaacacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36263580 |
tgaggatcaagttatcttctacttcactccattgatggtgcctctaaaagacaagccacctaccaagatacaaaggacactaccgccaccatcaacacca |
36263481 |
T |
|
| Q |
301 |
ctgtcaaaacctcatgtggaaaatctagctaggaataaagattcaagctcttctaagaaatgggtggttgttggaattgctgttggagctgcattcctgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36263480 |
ctgtcaaaacctcatgtggaaaatctagctaggaataaagattcaagctcttctaagaaatgggtggttgttggaattgctgttggagctgcattcctgc |
36263381 |
T |
|
| Q |
401 |
ttcttatcttttttgtgttgttattctgcttttgtcaggagcataagaacnnnnnnnnnttgtcttctgcagctaccaaaaccaccactgaggaagtctc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36263380 |
ttcttatcttttttgtgttgttattctgcttttgtcagcagcataagaacaaaaaaaaattgtcttctgcagctaccaaaaccaccactgaggaagtctc |
36263281 |
T |
|
| Q |
501 |
aaataccaacacaagta---ccaacccctccttttctctgtcttccgaagggcttcgttatgctgttgagtctttgacagtgtatgaatttgaggagctg |
597 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
36263280 |
aaataccaacacaagtataaccaacccctccttttctctgtgttccgaagggcttcgttatgcttttgagtctttgacagtgtatgaatttgaggagctg |
36263181 |
T |
|
| Q |
598 |
cataaagcaacgagctttttcagtgaagctaacaggataaagggttcttcagcttaccgagcaagcttgaagggtgatgatgctgcagttaaggttctca |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36263180 |
cataaagcaacgagctttttcagtgaagctaacaggataaggggttcttcagcttaccgagcaagcttgaagggtgatgatgctgcagttaaggttctca |
36263081 |
T |
|
| Q |
698 |
aaggcgatgtctctgtggagatcaatattctaaggagaatcaaccatgccaacataacaaggatctctgggctcagtgtacacaaaggaagcacatatct |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36263080 |
aaggcgatgtctctgtggagatcaatattctaaggagaatcaaccatgccaacataacaaggatctctgggctcagtgtacacaaaggaagcacatatct |
36262981 |
T |
|
| Q |
798 |
tgtttatgagtttgccgaaaatggttctcttgatgattggattcactttagcaagtgcataaactctgtggctctgacttggaagcaaagagttcagatt |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36262980 |
tgtttatgagtttgccgaaaatggttctcttgatgattggattcactttagcaagtgcataaactctgtggctctgacttggaagcaaagagttcagatt |
36262881 |
T |
|
| Q |
898 |
gctcaggatgtggcggatgctttgaattaccttcacaactatgtcaaccctccacatatc |
957 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36262880 |
gctcaggatgtggcggatgctttgaattaccttcacaactatgtcaaccctccacatatc |
36262821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 571 - 934
Target Start/End: Complemental strand, 36255904 - 36255545
Alignment:
| Q |
571 |
ttgacagtgtatgaatttgaggagctgcataaagcaacgagctttttcagtgaagctaacaggataaagggttcttcagcttaccgagcaagcttgaagg |
670 |
Q |
| |
|
|||||||||||| | |||||| |||||||||| ||||| |||||||| |||||||||| | |||||||| ||||| | |||||||||| ||||||||| |
|
|
| T |
36255904 |
ttgacagtgtataactttgagaagctgcataaggcaactagcttttttggtgaagctaagacaataaagggctcttcggtttaccgagcatgcttgaagg |
36255805 |
T |
|
| Q |
671 |
gtgatgatgctgcagttaaggttctcaaaggcgatgtctctgtggagatcaatattctaaggagaatcaaccatgccaacataacaaggatctctgggct |
770 |
Q |
| |
|
|| ||| | |||||||||||||||||||| | | ||||||| |||||| || |||||||||||||| ||||| |||||||| |||| | |||||| | |
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|
| T |
36255804 |
gtaatgcttctgcagttaaggttctcaaaagtggtgtctctacggagatgaacattctaaggagaattaaccacgccaacattacaaaactatctgggtt |
36255705 |
T |
|
| Q |
771 |
cagtgtacacaaaggaagcacatatcttgtttatgagtttgccgaaaatggttctcttgatgattggattcactttagcaagtgcataaactctgtggct |
870 |
Q |
| |
|
||||||||||| ||| | | ||||| | || |||||| | ||||| |||||||||||| ||| | |||| |||||||||||| |||||||||||||| |
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|
| T |
36255704 |
ttgtgtacacaaatgaa--atacatcttttctacgagtttactgaaaacggttctcttgataatt-gtttcattttagcaagtgcttaaactctgtggct |
36255608 |
T |
|
| Q |
871 |
ctgacttggaagcaaagagttcagattgctcaggatgtggcggatgctttgaattaccttcaca |
934 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| || | || |||||||||||| |||| |||| |
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|
| T |
36255607 |
ctaacttggaagcaaagagttcagattgctcagaat-ttgctgatgctttgaatcacctccaca |
36255545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 36256041 - 36255909
Alignment:
| Q |
32 |
ggctcaatatgcatgttccactcagg--tgtgcttgtcctacctccaagtaaattgaaaatggattcaagtatattcttacatacctggtctccgaagga |
129 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||| | | ||||||| |||| |||||||||||||||||| ||||| ||||| ||||||| |||||| |
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|
| T |
36256041 |
ggctcaatttgcatgttccactcaggggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtatcttcttgcatacttggtctctgaagga |
36255942 |
T |
|
| Q |
130 |
----gaatatcctgaacttattgctgagatttt |
158 |
Q |
| |
|
||||||||||||||||||| |||| |||| |
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|
| T |
36255941 |
gaatgaatatcctgaacttattgatgagctttt |
36255909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 779 - 844
Target Start/End: Original strand, 37062069 - 37062134
Alignment:
| Q |
779 |
acaaaggaagcacatatcttgtttatgagtttgccgaaaatggttctcttgatgattggattcact |
844 |
Q |
| |
|
||||||| | ||| |||||||||||||||||||| |||||| |||||||||||||||| |||||| |
|
|
| T |
37062069 |
acaaaggtaacacttatcttgtttatgagtttgctgaaaataattctcttgatgattggcttcact |
37062134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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