View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_low_13 (Length: 342)
Name: NF20037_low_13
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_low_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 65 - 342
Target Start/End: Original strand, 13972666 - 13972945
Alignment:
| Q |
65 |
aaaatcattgattacaatcttgatctattcatcctatgttaannnnnnnnn-gcaggtagcacatcatctatatcatatgaccaaataagnnnnnnn-gc |
162 |
Q |
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| T |
13972666 |
aaaatcattgattacaatcttgatctattcatcctatgttaattttttttttgcaggtagcacatcatctatatcatatgaccaaataagaaaaagaagc |
13972765 |
T |
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| Q |
163 |
tattttcttgtcaaattgcatggaaattgaaatctaagttttcctaaacttgcttctcaaaatcagtccctaaaatttacaaaacaaaatatattacata |
262 |
Q |
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| T |
13972766 |
tattttcttgtcaaattgcatggaaattgaaatctaagttttcctaaacttgcttctcaaaatcagtccctaaaatttacaaaacaaaatatattacata |
13972865 |
T |
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| Q |
263 |
tcaaattatataagaccatatgattaatggtactgaatgcacatataattacacaaaccagtactttaaccagtattaca |
342 |
Q |
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| T |
13972866 |
tcaaattatataagaccatatgattaatggtactgaatgcacatataattacacacaccagtactttaaccagtattaca |
13972945 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 13972614 - 13972645
Alignment:
| Q |
13 |
atactaaataatcttgatattggagacatatg |
44 |
Q |
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| T |
13972614 |
atactaaataatcttgatattggagacatatg |
13972645 |
T |
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