View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_low_15 (Length: 324)
Name: NF20037_low_15
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_low_15 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 18152946 - 18153238
Alignment:
| Q |
18 |
catttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18152946 |
catttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
18153045 |
T |
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| Q |
118 |
tcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153046 |
tcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccg |
18153145 |
T |
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| Q |
218 |
gatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctcctgttcat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153146 |
gatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctcctgttcat |
18153238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 1785790 - 1785691
Alignment:
| Q |
18 |
catttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1785790 |
catttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
1785691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 222762 - 222478
Alignment:
| Q |
18 |
catttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
117 |
Q |
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|||||| ||||| |||||||| ||||| || || |||||| ||| ||||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| |
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| T |
222762 |
catttctcctactcgttgtcccccttgcttggctcttcctctaaccggttgttgtgtaacaagtgagtagggcccagtagaacgcccatgaattttctca |
222663 |
T |
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| Q |
118 |
tcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccg |
217 |
Q |
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|||||||||||||||||||| || ||||| | ||| ||||||| |||||| || ||||| | | |||||||||||||||||||||| ||| ||||||| |
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| T |
222662 |
tcaacttgatgaattaattttaagatataggacttccctattagaacaggttgctcaaaggggtcgcctgttcttccatcaaatattctgctttttcccg |
222563 |
T |
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| Q |
218 |
gatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctc |
302 |
Q |
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| T |
222562 |
ggtactcgggttcaaatacccatggattttttgtttctttactggcttcatataattctgaaaacacaagttttcttgaagcctc |
222478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 23937231 - 23937344
Alignment:
| Q |
18 |
catttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
117 |
Q |
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||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23937231 |
cattttgcctaccagttgtcctccttgtttcacccttcctttaaggggttgttgtgtaacaagtgcataatgtccactgaaacgtccatgtattttatca |
23937330 |
T |
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| Q |
118 |
tcaacttgatgaat |
131 |
Q |
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| T |
23937331 |
tcaacttgatgaat |
23937344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 47586066 - 47586031
Alignment:
| Q |
160 |
ataacaggctgttcaaaaagattccctgttcttcca |
195 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
47586066 |
ataacaggctgttcaaaaagattccctgttcttcca |
47586031 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 22998200 - 22998273
Alignment:
| Q |
190 |
cttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggc |
263 |
Q |
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||||||| ||||||| |||| ||||||||||||| || | |||||| |||||||| ||||||| |||| |||| |
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| T |
22998200 |
cttccataaaatatttcgctttttcccggatacttaggctgaaatattcatggattggatgtttctttattggc |
22998273 |
T |
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