View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_low_19 (Length: 299)
Name: NF20037_low_19
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_low_19 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 18152972 - 18153238
Alignment:
| Q |
19 |
gtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaattaatttcaaaat |
118 |
Q |
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| T |
18152972 |
gtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaattaatttcaaaat |
18153071 |
T |
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| Q |
119 |
ataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcgggttcaaatatccatgga |
218 |
Q |
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| T |
18153072 |
ataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcgggttcaaatatccatgga |
18153171 |
T |
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| Q |
219 |
ttcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctcctgttcat |
285 |
Q |
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| T |
18153172 |
ttcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctcctgttcat |
18153238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 1785764 - 1785691
Alignment:
| Q |
19 |
gtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
92 |
Q |
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| T |
1785764 |
gtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
1785691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 39 - 277
Target Start/End: Complemental strand, 222716 - 222478
Alignment:
| Q |
39 |
ggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataa |
138 |
Q |
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| T |
222716 |
ggttgttgtgtaacaagtgagtagggcccagtagaacgcccatgaattttctcatcaacttgatgaattaattttaagatataggacttccctattagaa |
222617 |
T |
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| Q |
139 |
caggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggc |
238 |
Q |
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|||| || ||||| | | |||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||| ||||| ||||||||| |
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| T |
222616 |
caggttgctcaaaggggtcgcctgttcttccatcaaatattctgctttttcccgggtactcgggttcaaatacccatggattttttgtttctttactggc |
222517 |
T |
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| Q |
239 |
ttcatataattcagaaaacacaagttttctggaagcctc |
277 |
Q |
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| T |
222516 |
ttcatataattctgaaaacacaagttttcttgaagcctc |
222478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 23937257 - 23937344
Alignment:
| Q |
19 |
gtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaat |
106 |
Q |
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| T |
23937257 |
gtttcacccttcctttaaggggttgttgtgtaacaagtgcataatgtccactgaaacgtccatgtattttatcatcaacttgatgaat |
23937344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 47586066 - 47586031
Alignment:
| Q |
135 |
ataacaggctgttcaaaaagattccctgttcttcca |
170 |
Q |
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| T |
47586066 |
ataacaggctgttcaaaaagattccctgttcttcca |
47586031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 22998200 - 22998273
Alignment:
| Q |
165 |
cttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggc |
238 |
Q |
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||||||| ||||||| |||| ||||||||||||| || | |||||| |||||||| ||||||| |||| |||| |
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| T |
22998200 |
cttccataaaatatttcgctttttcccggatacttaggctgaaatattcatggattggatgtttctttattggc |
22998273 |
T |
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