View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_low_2 (Length: 759)
Name: NF20037_low_2
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 412 - 743
Target Start/End: Original strand, 40341209 - 40341536
Alignment:
| Q |
412 |
ttacttagggctcagtacccgaagtacaagtgttttccttttcagagctccatatttttctcatttgtcttttatatgttccatcacttcaacattcaca |
511 |
Q |
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| T |
40341209 |
ttacttagggctcagttcccgaagtacaagtgttttccttttcagtgctccatatttttctcatttgtcttttatatgttccatcacttcaacattcaca |
40341308 |
T |
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| Q |
512 |
tatctcatctcaactcaataataatatttattatattgcttcttcta-agttcttatactcttgtcattcattcagattttgtttattactccttcagtg |
610 |
Q |
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| T |
40341309 |
tatctcatctcaactcaataataatatttactatattgcttcttctagagttcttatactcttgtcattcattcagattttgtttattactccttca--- |
40341405 |
T |
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| Q |
611 |
gtgttactaaatccactttgtctttatatatctactctcttcctttaacccttcattttttaatccttataattggaaccaaaaaatttcatattctttt |
710 |
Q |
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| T |
40341406 |
--gttactaaatccactttgtctttatatatctactctcttcctttaacccttcattttttaatccttataattggaacaaaaaaatttcatattctttt |
40341503 |
T |
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| Q |
711 |
gattcagtttctcaccactattacaaattttct |
743 |
Q |
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| T |
40341504 |
gattcagtttctcaccactattacaaattttct |
40341536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 40340825 - 40340893
Alignment:
| Q |
23 |
caagaaacagaaaatgggtacaacccattccaattccagctatataacataaaacccaaaacaatattt |
91 |
Q |
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| T |
40340825 |
caagaaacagaaaatgggtacaacccattccaattccagctatataacataaaacccaaaataatattt |
40340893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 40341044 - 40341103
Alignment:
| Q |
242 |
catgcatgtccgttagtggtgaacttgtccctttcatttgtgtcgttttgctgtttctgg |
301 |
Q |
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| T |
40341044 |
catgcatgtccgttagtggtgaacttgtccctttcatttgtgtcgttttgctgtttctgg |
40341103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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