View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_low_20 (Length: 295)
Name: NF20037_low_20
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 43487264 - 43487489
Alignment:
| Q |
9 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43487264 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
43487363 |
T |
|
| Q |
109 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctgtacagatataa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43487364 |
gccctcaacacaaccatgctaagatccatttgattattctcatccacacgaaaattgaagcgcttgaagttacttccacatttcacctgtacagatataa |
43487463 |
T |
|
| Q |
209 |
caagtgacatatgatatttttgtttt |
234 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
43487464 |
caagtgacatatgatatttttgtttt |
43487489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 43465504 - 43465710
Alignment:
| Q |
9 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
108 |
Q |
| |
|
||||| |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||| ||| || ||||||||||| ||||||||||||| |
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| T |
43465504 |
atcattatcatccacaagattcaccaagtcgccatcttcatcaacatatttcagactgaaatttgcatccgcattaaaattgaaattagaccgtatctta |
43465603 |
T |
|
| Q |
109 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctgtacagatataa |
208 |
Q |
| |
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||||||||| |||||||| ||||| |||| |||||||||||| ||||||| ||| |||||||||||| || ||||| ||||||||| || |||||||| |
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| T |
43465604 |
gccctcaactcaaccatgtcaagattcattacattattctcatccacacgaacattaaagcgcttgaaggtatttccaaatttcacctatatagatataa |
43465703 |
T |
|
| Q |
209 |
caagtga |
215 |
Q |
| |
|
||||||| |
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|
| T |
43465704 |
caagtga |
43465710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 43459806 - 43460000
Alignment:
| Q |
9 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
108 |
Q |
| |
|
|||||||||||| ||||||| |||| |||| ||||||||||||||||| ||| ||||||||||| || | | |||||||| ||| |||||||||||||| |
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| T |
43459806 |
atcatcatcatctacaagattcaccaagtcgccctcttcatcaacatatctcaaactgaaatttgcattatcagtaaaattaaaatcagaccgtatctta |
43459905 |
T |
|
| Q |
109 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctgtacaga |
203 |
Q |
| |
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||||||| | ||||||| ||||||||||| ||||||||||||| |||| || |||||||||||||||| || || || |||||||||||||||| |
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| T |
43459906 |
gccctcagctcaaccatcttaagatccattcgattattctcatccacactaacattgaagcgcttgaaggtattttcaaatttcacctgtacaga |
43460000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 43478938 - 43479146
Alignment:
| Q |
9 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
108 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||| ||| || ||||| ||||| |||||||||||| |
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| T |
43478938 |
atcatcatcatccacaagattcaccaagtcaccctcttcatcaacatatctcagactgaaatttacatctgcattaaaaatgaaatatgaccgtatctta |
43479037 |
T |
|
| Q |
109 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctgtacagatataa |
208 |
Q |
| |
|
||||||||| |||||||| ||| || | |||||||||||||||| ||||||| || ||| || ||| | || || || |||||||||| ||| |||||| |
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|
| T |
43479038 |
gccctcaactcaaccatgttaatattcctttgattattctcatccacacgaacatgaaagtgcatgacggtattttcaaatttcacctgcacaaatataa |
43479137 |
T |
|
| Q |
209 |
caagtgaca |
217 |
Q |
| |
|
||| |||| |
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|
| T |
43479138 |
taagcgaca |
43479146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 43494252 - 43494437
Alignment:
| Q |
9 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
108 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||||||||||||||| ||||| ||||||||| || | |||||||||||| ||||||||||||| |
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|
| T |
43494252 |
atcatcatcatccacaagattcaccaagtcaccctcttcatcaacatatctcagaatgaaatttgcatgac---taaaattgaaaatagaccgtatctta |
43494348 |
T |
|
| Q |
109 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctg |
197 |
Q |
| |
|
||| |||| ||||||| ||||||||| || |||||||||||| ||| ||| | |||| || ||||| || ||||| |||||||||| |
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|
| T |
43494349 |
gccttcaaactaaccatgttaagatccacttcattattctcatcaacatgaacactgaaacgtctgaaggtatttccatatttcacctg |
43494437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 43467875 - 43468084
Alignment:
| Q |
9 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
108 |
Q |
| |
|
||||| |||||||||||||| |||| ||| | |||||||||||||| ||||| |||| |||| || ||| ||||||||||||||||| | ||||||| |
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|
| T |
43467875 |
atcattatcatccacaagattcacctgctcgccatcttcatcaacatagctcagaatgaagtttgcattagcagtaaaattgaaaacagaacatatctta |
43467974 |
T |
|
| Q |
109 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctgtacagatataa |
208 |
Q |
| |
|
|||||||| |||||||| |||| ||||| |||||||| ||||| | || || | || || ||||| || ||||| |||||||||| ||||| |||| |
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|
| T |
43467975 |
tccctcaacccaaccatgttaaggtccatgtgattattgtcatccatacaaacaccgatccgtctgaaggtatttccatatttcacctgaacagaaataa |
43468074 |
T |
|
| Q |
209 |
caagtgacat |
218 |
Q |
| |
|
||||| |||| |
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|
| T |
43468075 |
caagtaacat |
43468084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 43452644 - 43452806
Alignment:
| Q |
9 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
108 |
Q |
| |
|
|||||||||||||||||||| |||| |||| | || |||||||||||| ||||| | | ||| |||||| | |||||| ||| ||| | ||||||| |
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|
| T |
43452644 |
atcatcatcatccacaagattcaccaagtcgccatcctcatcaacatatctcagagttagattcacatcagcagggaaattgtaaatagaacatatctta |
43452743 |
T |
|
| Q |
109 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgc |
171 |
Q |
| |
|
| ||||||| |||||||| ||||||||| |||| |||||||| ||||||| |||||||||| |
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|
| T |
43452744 |
gacctcaacccaaccatgttaagatccaaccgattgttctcatccacacgaacattgaagcgc |
43452806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 43475427 - 43475534
Alignment:
| Q |
9 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
108 |
Q |
| |
|
||||| |||||||||||||| |||| | ||| | |||||||||||||| ||||| |||| |||| |||| | ||||||| |||| ||||| ||||||| |
|
|
| T |
43475427 |
atcattatcatccacaagattcaccatctcggcatcttcatcaacatagctcagagtgaattttgcatcatcagtaaaataaaaaatagaccttatctta |
43475526 |
T |
|
| Q |
109 |
gccctcaa |
116 |
Q |
| |
|
|||||||| |
|
|
| T |
43475527 |
gccctcaa |
43475534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 43482674 - 43482849
Alignment:
| Q |
43 |
tcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatcttagccctcaacacaaccatgctaagatccatttgat |
142 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| |||| | ||||||| |||| ||||| |||||||||||||||| ||||||| || ||| ||||||| |
|
|
| T |
43482674 |
tcttcatcaacatagctcagagtgaattttacatcatcagtaaaatcaaaaatagaccttatcttagccctcaacctaaccatgtcaatatcaatttgat |
43482773 |
T |
|
| Q |
143 |
tattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctgtacagatataacaagtgacat |
218 |
Q |
| |
|
|||| ||||| ||| || |||||||||| || || | |||| | ||||||| ||||| |||||||||||||| |
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|
| T |
43482774 |
tattgtcatccacagaaacattgaagcgcctgtaggcatctccaaacctcacctgaacagaaataacaagtgacat |
43482849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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