View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_low_24 (Length: 261)
Name: NF20037_low_24
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 40121362 - 40121596
Alignment:
| Q |
11 |
caaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcacc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40121362 |
caaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttgtcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcacc |
40121461 |
T |
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| Q |
111 |
aatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40121462 |
aatagcaccaatggcaccaacacctatcaaagtatacaaagtggatccaataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcatg |
40121561 |
T |
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| Q |
211 |
cctccacagcctcatcacaaccttgaccttcaaag |
245 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40121562 |
cctccacagcctcatcacaaccttgaccttcaaag |
40121596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 40092536 - 40092773
Alignment:
| Q |
8 |
aagcaaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggc |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092536 |
aagcaaatggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggc |
40092635 |
T |
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| Q |
108 |
accaatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttc |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092636 |
accaatagcaccaatggcaccaacacctgccaaagtatacaaagtggatccaataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttc |
40092735 |
T |
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| Q |
208 |
atgcctccacagcctcatcacaaccttgaccttcaaag |
245 |
Q |
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| T |
40092736 |
ataccttcacagcctcatcacaaacttgatcttcaaag |
40092773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 40125011 - 40125245
Alignment:
| Q |
11 |
caaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcacc |
110 |
Q |
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|||| |||||||| ||| |||||| ||||| | || | | |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |
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| T |
40125011 |
caaatggatcaattaaacatgaatgcccttgtcaaactcattattcttggcttcactcagtaagaaaatcacctgtaaagacatggaataagaagttacc |
40125110 |
T |
|
| Q |
111 |
aatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcatg |
210 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40125111 |
aatagcaccaatggcaccaacacctgccaaagtatacaaagtggatccaataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcata |
40125210 |
T |
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| Q |
211 |
cctccacagcctcatcacaaccttgaccttcaaag |
245 |
Q |
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||| |||||||||||||||| ||||| |||||||| |
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| T |
40125211 |
ccttcacagcctcatcacaaacttgatcttcaaag |
40125245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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