View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20037_low_33 (Length: 209)
Name: NF20037_low_33
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 43227358 - 43227188
Alignment:
| Q |
17 |
actttggtgtctctcatgaagatagaaggaaatttgagtggatcagttgttttttctccattatgtcatttgtttgtctctccatcgaccatcgtcgcga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
43227358 |
actttggtgtctctcatgaagatagaaggaaatttgagtggatcagttgttttttctccattatgtcgtttgtttgtctctccattgaccatcgtcgcga |
43227259 |
T |
|
| Q |
117 |
acaacgtgaggaagaacgtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttaga |
187 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43227258 |
acaacgcgaagaagaacgtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttaga |
43227188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 43236849 - 43236696
Alignment:
| Q |
34 |
gaagatagaaggaaatttgagtggatcagttgttttttctccattatgtcatttgtttgtctctccatcgaccatcgtcgcgaacaacgtgaggaagaac |
133 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| | | ||||| |||| |||||| |||| || ||||||| |
|
|
| T |
43236849 |
gaagatagaaggatatttgagtgggcaagttgttttttctccattatatcatttgtttgtatatggatcgattatcgccgcgaagaacgcgaagaagaac |
43236750 |
T |
|
| Q |
134 |
gtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttaga |
187 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43236749 |
gtcttgaacaacccgttccttttaaaattattattaaggacaaaagggtttaga |
43236696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 43244901 - 43244862
Alignment:
| Q |
148 |
gttccttttaaaattattattaaggacaaaggggtttaga |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
43244901 |
gttccttttaaaattattattaaggacaaaaggttttaga |
43244862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University