View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20037_low_4 (Length: 594)

Name: NF20037_low_4
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20037_low_4
NF20037_low_4
[»] chr1 (14 HSPs)
chr1 (32-538)||(26990362-26990873)
chr1 (503-570)||(26990870-26990937)
chr1 (211-391)||(12172897-12173079)
chr1 (258-327)||(47028919-47028994)
chr1 (211-304)||(26384900-26384994)
chr1 (339-391)||(19472873-19472925)
chr1 (261-304)||(42442108-42442151)
chr1 (349-391)||(28447802-28447844)
chr1 (340-390)||(42442015-42442065)
chr1 (262-299)||(30465118-30465155)
chr1 (346-391)||(43460785-43460830)
chr1 (339-391)||(8462976-8463028)
chr1 (339-395)||(26385036-26385091)
chr1 (339-391)||(38548750-38548802)
[»] chr5 (7 HSPs)
chr5 (35-212)||(20998964-20999142)
chr5 (413-570)||(21012168-21012344)
chr5 (226-304)||(2292116-2292196)
chr5 (226-390)||(23172981-23173153)
chr5 (348-391)||(9597761-9597804)
chr5 (339-390)||(9931804-9931855)
chr5 (339-391)||(22887284-22887336)
[»] chr4 (6 HSPs)
chr4 (84-212)||(54666358-54666485)
chr4 (339-391)||(15186988-15187040)
chr4 (346-399)||(16662306-16662359)
chr4 (339-391)||(25641276-25641328)
chr4 (504-570)||(10036336-10036401)
chr4 (339-391)||(16572143-16572195)
[»] chr3 (10 HSPs)
chr3 (228-391)||(31525322-31525488)
chr3 (269-391)||(43073053-43073179)
chr3 (339-391)||(28934743-28934795)
chr3 (339-391)||(10454357-10454409)
chr3 (339-391)||(52076138-52076190)
chr3 (339-390)||(47820975-47821026)
chr3 (260-366)||(53349391-53349503)
chr3 (340-398)||(20701222-20701280)
chr3 (211-300)||(55166925-55167012)
chr3 (339-391)||(9358756-9358808)
[»] chr8 (9 HSPs)
chr8 (213-391)||(5200489-5200672)
chr8 (211-304)||(10124799-10124894)
chr8 (236-391)||(24200629-24200787)
chr8 (339-399)||(38086413-38086473)
chr8 (226-304)||(25829365-25829445)
chr8 (259-391)||(40930837-40930972)
chr8 (339-390)||(25829272-25829323)
chr8 (339-391)||(584142-584194)
chr8 (339-391)||(13959226-13959278)
[»] chr7 (9 HSPs)
chr7 (258-391)||(41702852-41702991)
chr7 (226-391)||(46691852-46692025)
chr7 (339-391)||(42598059-42598111)
chr7 (209-391)||(30655605-30655796)
chr7 (339-391)||(1039070-1039122)
chr7 (339-391)||(31424779-31424831)
chr7 (339-391)||(36615810-36615862)
chr7 (339-390)||(33320774-33320825)
chr7 (340-390)||(43397719-43397768)
[»] chr2 (3 HSPs)
chr2 (339-391)||(41419693-41419745)
chr2 (340-391)||(38908743-38908794)
chr2 (341-391)||(22649072-22649122)
[»] scaffold0209 (1 HSPs)
scaffold0209 (339-391)||(12902-12954)
[»] chr6 (1 HSPs)
chr6 (339-391)||(6575798-6575850)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 32 - 538
Target Start/End: Original strand, 26990362 - 26990873
Alignment:
Q  32 atggtttggttagggttagattttaacttgttgaaaagttttctctggtatg-agcagtttccattaccataacttagttcccctgtagagaatttgaaa 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||    
T  26990362 atggtttggttagggttagattttaacttgttgaaaagttttctctggtatatagcagtttccattaccataacttagttcccttgtagagaatttgaaa 26990461  T
Q  131 attggattggagatgtcttactctctagaaatttcatttttatctttaataactagctatagctataacttgtatttccttgtggtatgtcattcgtata 230  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||    
T  26990462 attggattggagatgtcttactctctagcaatttcatttttatctttaataactagctatagctataacttgtatttacttgtggtatgtcatatgtata 26990561  T
Q  231 tgcccgcgtcattattcttttggttgatcttttgtttaggggtagtttttaaggggtttttattcgagccg------gtgcggcaaccgatttctccttg 324  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||      ||||||||| ||||||  |||||    
T  26990562 tgcctgcgtcattattcttttggttgatcttttgtttaggggtggtttttaagggatttttgtttgagccggtgcttgtgcggcaatcgattttcccttg 26990661  T
Q  325 tatgnnnnnnnnnnccacccaagcttattagtgcttcttgcacaggcttattggttattaatattttactgattcnnnnnnnnnnnntatgagtcacatg 424  Q
    ||||          ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||            |||||||||||||    
T  26990662 tatg--ttttttttccacccaagcttattagtgcttcttgcacgggcttattggttaataatattttgccgattcaaaaaagaaaaatatgagtcacatg 26990759  T
Q  425 aaaagaacatgttagagaatattttgaaagaatttgatatccctccagacttagttaaattttataattcaggatgtaatttgaacataagttttaaatt 524  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  26990760 aaaagaacatgttagagaatattttgaaagaatatgatatccctccaggcttagttaagttttataattcatggtgtaatttgaacataagttttaaatt 26990859  T
Q  525 tgaggggggtattt 538  Q
    ||||||||||||||    
T  26990860 tgaggggggtattt 26990873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 503 - 570
Target Start/End: Original strand, 26990870 - 26990937
Alignment:
Q  503 atttgaacataagttttaaatttgaggggggtatttaccaaatttttataatgatacaaattttagac 570  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26990870 atttgcacataagtgttaaatttgaggggggtatttgccaaatttttataatgatacaaattttagac 26990937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 211 - 391
Target Start/End: Original strand, 12172897 - 12173079
Alignment:
Q  211 tgtggtatgtcattcgtatatgcccgcgtcattattcttttggttgatcttttgtttaggggtagtttttaaggggtttttattcgagccg------gtg 304  Q
    ||||||||| |||  |||||||||| |||||||||||||| |||| |||||||||||  |||| ||||||||||||||||| ||||||| |      |||    
T  12172897 tgtggtatgccatatgtatatgcccacgtcattattcttt-ggtt-atcttttgttttagggtggtttttaaggggtttttgttcgagctgatgtttgtg 12172994  T
Q  305 cggcaaccgatttctccttgtatgnnnnnnnnnnccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
     ||||||||||||| |||||| ||          ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  12172995 tggcaaccgatttccccttgtttg--ttttttttccacccaagcttattagtgcttcttgcacgggcttgttggttaataatatttt 12173079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 47028919 - 47028994
Alignment:
Q  258 tcttttgtttaggggtagtttttaaggggtttttattcgagccgg------tgcggcaaccgatttctccttgtat 327  Q
    |||||||||||||||||||||||||||||||||| ||||||||||      |||||||||||||||| ||||||||    
T  47028919 tcttttgtttaggggtagtttttaaggggtttttgttcgagccggtgtttttgcggcaaccgatttccccttgtat 47028994  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 26384900 - 26384994
Alignment:
Q  211 tgtggtatgtcattcgtatatgcccgcgtcattattctttt-ggttgatcttttgtttaggggtagtttttaaggggtttttattcgagccggtg 304  Q
    |||||| ||||||  ||||||||| ||||||||| |||||| ||||| || ||| ||||||||| |||||||||||| |||| || |||| ||||    
T  26384900 tgtggtttgtcatatgtatatgcctgcgtcattactcttttaggttgttcctttctttaggggtggtttttaagggggttttgtttgagctggtg 26384994  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 19472873 - 19472925
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| ||||||||||||| |||||||| ||||| ||||||| |||||||||    
T  19472873 ccacccgagcttattagtgcgtcttgcacgggcttgttggttaataatatttt 19472925  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 42442151 - 42442108
Alignment:
Q  261 tttgtttaggggtagtttttaaggggtttttattcgagccggtg 304  Q
    ||||||||||||| ||||||||||||||||| |||||| |||||    
T  42442151 tttgtttaggggtggtttttaaggggtttttgttcgagtcggtg 42442108  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 28447802 - 28447844
Alignment:
Q  349 ttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||    
T  28447802 ttattagtgcttcttgcacgggcttgttggttaataatatttt 28447844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 42442065 - 42442015
Alignment:
Q  340 cacccaagcttattagtgcttcttgcacaggcttattggttattaatattt 390  Q
    ||||| |||||||||||||||||||||| | ||| ||||||| ||||||||    
T  42442065 cacccgagcttattagtgcttcttgcacggacttgttggttaataatattt 42442015  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 30465155 - 30465118
Alignment:
Q  262 ttgtttaggggtagtttttaaggggtttttattcgagc 299  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  30465155 ttgtttatgggtagtttttaaggggtttttgttcgagc 30465118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 43460785 - 43460830
Alignment:
Q  346 agcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    ||||||||||||||||| |||||| ||| ||||||| |||||||||    
T  43460785 agcttattagtgcttctcgcacagacttgttggttaataatatttt 43460830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 8463028 - 8462976
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| |||| |||||||||||||||||  |||| ||||||| |||||||||    
T  8463028 ccacccgagctaattagtgcttcttgcacgagcttgttggttaataatatttt 8462976  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 26385036 - 26385091
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatattttactg 395  Q
    ||||||||||||||||| |||||||| || ||||| | ||||| |||||||||||||    
T  26385036 ccacccaagcttattagcgcttcttg-acgggcttgtcggttaataatattttactg 26385091  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 38548750 - 38548802
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| ||||||||||||| |||||||| || || ||||||| |||||||||    
T  38548750 ccacccgagcttattagtgcgtcttgcacgggtttgttggttaataatatttt 38548802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 20998964 - 20999142
Alignment:
Q  35 gtttggttagggttagattttaacttgttgaaaagttttctctggtatg-agcagtttccattaccataacttagttcccctgtagagaatttgaaaatt 133  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |||  |||||||||||||||||||  |||||||| ||||||||||    
T  20998964 gtttggttagggttagcttttaacttcttgaaaagttttctctggtatgtagcaatttttattaccataacttagttcctttgtagagattttgaaaatt 20999063  T
Q  134 ggattggagatgtcttactctctagaaatttcatttttatctttaataactagctatagctataacttgtatttccttg 212  Q
    |||||| ||||| ||||| |||||| ||||||| ||| |||||||||||||||||||| |||||||||| |||| ||||    
T  20999064 ggattgcagatgccttaccctctagcaatttcactttcatctttaataactagctatatctataacttgcatttacttg 20999142  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 413 - 570
Target Start/End: Original strand, 21012168 - 21012344
Alignment:
Q  413 atgagtcacatgaaaagaacatgttagagaata---ttttgaaagaatttgatatccctccagacttagttaaattttataattcaggatgtaattt--- 506  Q
    |||||||| |||||||||||||||||||||||    || |||||||||||||||| ||||||  |||||||||||||||| ||||||| ||||||||       
T  21012168 atgagtcaaatgaaaagaacatgttagagaatgatgttctgaaagaatttgatatgcctccaagcttagttaaattttatcattcagggtgtaatttttt 21012267  T
Q  507 -------------gaacataagttttaaatttgaggggggtatttaccaaatttttataatgatacaaattttagac 570  Q
                 | |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  21012268 tttgggggtatttggacataagtgttaaatttgaggggggtatttgctaaatttttataatgatacaaattttagac 21012344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 2292116 - 2292196
Alignment:
Q  226 gtatatgcccgcgtcattattcttttggttgat-cttttgtttaggggtagtttt-taaggggtttttattcgagccggtg 304  Q
    |||||| |||||||||||| ||||| ||||| | ||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  2292116 gtatattcccgcgtcattactctttgggttggttcttttgtttaggggtggttttttaaggggtttttgttcgagccggtg 2292196  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 226 - 390
Target Start/End: Complemental strand, 23173153 - 23172981
Alignment:
Q  226 gtatatgcccgcgtcattattcttttggttgatct--tttgtttaggggtagtttttaaggggtttttattcgagccggtgc------ggcaaccgattt 317  Q
    ||||||||  ||||||||| ||| ||||||| | |  |||||||| |||| |||||||||||| |||| ||||||||||||       |||||| |||||    
T  23173153 gtatatgcttgcgtcattactctattggttggtttcctttgtttatgggtggtttttaagggggttttgttcgagccggtgtttatagggcaactgattt 23173054  T
Q  318 ctccttgtatgnnnnnnnnnnccacccaagcttattagtgcttcttgcacaggcttattggttattaatattt 390  Q
    |||||||| ||          |||||| |||||||||||||||||||||| ||||| ||||||| ||||||||    
T  23173053 ctccttgtttgtattttttttccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattt 23172981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 9597804 - 9597761
Alignment:
Q  348 cttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    
T  9597804 cttattagtgcttcttgcacaggcttgttggttaataatatttt 9597761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 9931855 - 9931804
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatattt 390  Q
    |||||||||||| |||||||||||||||| ||||| ||||||| ||||||||    
T  9931855 ccacccaagcttgttagtgcttcttgcacgggcttgttggttaataatattt 9931804  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 22887284 - 22887336
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| ||||||||||||| ||| |||| ||||| ||||||| |||||||||    
T  22887284 ccacccgagcttattagtgcatctcgcacgggcttgttggttaataatatttt 22887336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 54666485 - 54666358
Alignment:
Q  84 agcagtttccattaccataacttagttcccctgtagagaatttgaaaattggattggagatgtcttactctctagaaatttcatttttatctttaataac 183  Q
    |||||||||||||||||||||||||||||| |  | ||||||||||||||| ||| |||| | ||||  |||||| ||||| |||||| ||||||||| |    
T  54666485 agcagtttccattaccataacttagttcccttccacagaatttgaaaattgtattagagaagccttaacctctagcaatttaatttttgtctttaatagc 54666386  T
Q  184 tagctatagctataacttgtatttccttg 212  Q
    ||| |||||||||||||||||||| ||||    
T  54666385 tag-tatagctataacttgtatttacttg 54666358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 15187040 - 15186988
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||||||||||||||||| |||||||| ||||| ||||||| |||||||||    
T  15187040 ccacccaagcttattagtgcatcttgcacgggcttgttggttaataatatttt 15186988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 346 - 399
Target Start/End: Complemental strand, 16662359 - 16662306
Alignment:
Q  346 agcttattagtgcttcttgcacaggcttattggttattaatattttactgattc 399  Q
    ||||||||||||||||| |||| ||||| ||||||| ||||||||| |||||||    
T  16662359 agcttattagtgcttctcgcacgggcttgttggttaataatattttgctgattc 16662306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 25641328 - 25641276
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||||||||| |||||||||||||||| ||||| ||||||| ||| |||||    
T  25641328 ccacccaagctttttagtgcttcttgcacgggcttgttggttaataacatttt 25641276  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 570
Target Start/End: Complemental strand, 10036401 - 10036336
Alignment:
Q  504 tttgaacataagttttaaatttgaggggggtatttaccaaatttttataatgatacaaattttagac 570  Q
    |||| ||||||||||||||||||| ||||| |||| ||  ||||||||||| | |||||||||||||    
T  10036401 tttgtacataagttttaaatttgaagggggcatttgcc-tatttttataatcacacaaattttagac 10036336  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 16572143 - 16572195
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| ||||||||||||| ||| |||| ||||| ||||||| |||||||||    
T  16572143 ccacccgagcttattagtgcatctcgcacgggcttgttggttaataatatttt 16572195  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 228 - 391
Target Start/End: Original strand, 31525322 - 31525488
Alignment:
Q  228 atatgcccgcgtcattattcttttggttgatcttttgtttaggggtagtttttaaggggtttttattcgagccg------gtgcggcaaccgatttctcc 321  Q
    ||||||||||||||||||||||| | || |||||||||||  |||| ||||||||||||||||| |||||||||      ||| ||||||||||||| ||    
T  31525322 atatgcccgcgtcattattctttag-ttaatcttttgttttagggtggtttttaaggggtttttgttcgagccgttgtttgtgtggcaaccgatttcccc 31525420  T
Q  322 ttgtatgnnnnnnnnnnccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||| ||          ||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  31525421 ttgtttgtttttttt--ccacccaagcttattagtgcttcttgcacaggcttgttggttaataatatttt 31525488  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 391
Target Start/End: Complemental strand, 43073179 - 43073053
Alignment:
Q  269 ggggtagtttttaaggggtttttattcgagccggtgc-----ggcaaccgatttctccttgtatgnnnnnnnnnnccacccaagcttattagtgcttctt 363  Q
    ||||| ||||||||||||||||| ||||||||||||      ||||||||||||| ||||||||           |||||||||||||||||||| ||||    
T  43073179 ggggtggtttttaaggggtttttgttcgagccggtgttttaaggcaaccgatttccccttgtat-tcttttttttccacccaagcttattagtgcatctt 43073081  T
Q  364 gcacaggcttattggttattaatatttt 391  Q
    |||| ||||| ||||||| |||||||||    
T  43073080 gcacgggcttgttggttaataatatttt 43073053  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 28934795 - 28934743
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| |||||||||||||||||||||| ||||| ||||||| |||||||||    
T  28934795 ccacccgagcttattagtgcttcttgcacgggcttgttggttaataatatttt 28934743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 10454357 - 10454409
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| |||||||||||||| ||||||| ||||| ||||||| |||||||||    
T  10454357 ccacccgagcttattagtgctccttgcacgggcttgttggttaataatatttt 10454409  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 52076138 - 52076190
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| ||||||||||||||||| |||| ||||| ||||||| |||||||||    
T  52076138 ccacccgagcttattagtgcttctcgcacgggcttgttggttagtaatatttt 52076190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 47820975 - 47821026
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatattt 390  Q
    |||||| ||||||||||||| |||||||| ||||| ||||||| ||||||||    
T  47820975 ccacccgagcttattagtgcgtcttgcacgggcttgttggttaataatattt 47821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 53349391 - 53349503
Alignment:
Q  260 ttttgtttaggggtagtttttaaggggtttttattcgagccg------gtgcggcaaccgatttctccttgtatgnnnnnnnnnnccacccaagcttatt 353  Q
    |||||||| ||||| ||||||||||||||||| || ||||||      ||||||||||||||||  |||||||||          ||||||||| |||||    
T  53349391 ttttgttttggggtggtttttaaggggtttttgtttgagccggtgtttgtgcggcaaccgattttcccttgtatgtttaattttcccacccaagtttatt 53349490  T
Q  354 agtgcttcttgca 366  Q
    |||||||||||||    
T  53349491 agtgcttcttgca 53349503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 20701222 - 20701280
Alignment:
Q  340 cacccaagcttattagtgcttcttgcacaggcttattggttattaatattttactgatt 398  Q
    ||||| ||||||||||||||||||| || ||||  ||||||| ||||||||| ||||||    
T  20701222 cacccgagcttattagtgcttcttgtacgggctcgttggttaataatattttgctgatt 20701280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 55167012 - 55166925
Alignment:
Q  211 tgtggtatgtcattcgtatatgcccgcgtcattattcttttggttgatcttttgtttaggggtagtttttaaggggtttttattcgagcc 300  Q
    |||||| ||||||  ||||||||| ||| ||||| ||||||| |  ||  ||||| ||||||| ||||||||||||||||| ||||||||    
T  55167012 tgtggtttgtcatatgtatatgcctgcgacattactcttttgttccat--tttgtgtaggggtggtttttaaggggtttttgttcgagcc 55166925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 9358808 - 9358756
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||||||||||||||| ||||| |||| ||||| |||| || |||||||||    
T  9358808 ccacccaagcttattagtacttctcgcacgggcttgttgggtaataatatttt 9358756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 213 - 391
Target Start/End: Complemental strand, 5200672 - 5200489
Alignment:
Q  213 tggtatgtcattcgtatatgcccgcgtcattattcttttggttgatcttttgtttaggggtagtttttaaggggtttttattcgagccg------gtgcg 306  Q
    |||| ||||||||| ||||||| ||||||||| ||||||| ||| ||| ||||||||||||  |||||||||||||||| |||||||||      |||||    
T  5200672 tggtttgtcattcgcatatgcctgcgtcattactcttttgattgttctgttgtttaggggtgatttttaaggggtttttgttcgagccggtgtttgtgcg 5200573  T
Q  307 gcaaccgatttctccttgtatgnnnnnnnnnnccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||||||||  |||||||||          |||||||| |||||||||| ||||||||| | ||| ||||||| |||||||||    
T  5200572 gcaaccgattttcccttgtatg-tttttttctccacccaaacttattagtgtttcttgcacggacttgttggttaataatatttt 5200489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 10124799 - 10124894
Alignment:
Q  211 tgtggtatgtcattcgtatatgcccgcgtcattattcttttggtt-gatcttttgtttaggggtag-tttttaaggggtttttattcgagccggtg 304  Q
    |||||||||||||  |||||| |||||||||||| ||||| |||| | |||||||||||||||| | |||||||||||||||| ||||||||||||    
T  10124799 tgtggtatgtcatatgtatattcccgcgtcattactctttgggttggttcttttgtttaggggtggttttttaaggggtttttgttcgagccggtg 10124894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 236 - 391
Target Start/End: Complemental strand, 24200787 - 24200629
Alignment:
Q  236 gcgtcattattcttttggttgatcttttgtttaggggtagtttttaaggggtttttattcgagccgg------tgcggcaaccgatttctccttgtatgn 329  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||| | |||||| ||||||||||      |||||||||||||||| |||||||||     
T  24200787 gcgtcattactcttttggttgttcctttgtttaggggtggtttttaa-gtgtttttgttcgagccggtgtttttgcggcaaccgatttccccttgtatg- 24200690  T
Q  330 nnnnnnnnnccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
             ||||||||||||||||||||||||||||| | ||| ||| ||| |||||||||    
T  24200689 -ttttttttccacccaagcttattagtgcttcttgcacggacttgttgattaataatatttt 24200629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 38086473 - 38086413
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatattttactgattc 399  Q
    |||||| ||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||    
T  38086473 ccacccgagcttattagtgcgtcttgcacgggcttattggttaataatattttgctgattc 38086413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 25829445 - 25829365
Alignment:
Q  226 gtatatgcccgcgtcattattcttttggttgatct--tttgtttaggggtagtttttaaggggtttttattcgagccggtg 304  Q
    ||||||||  ||||||||| ||||||||||| | |  |||||||| |||| ||||||||||||||||||||| ||||||||    
T  25829445 gtatatgcttgcgtcattactcttttggttggtttcctttgtttatgggtggtttttaaggggtttttattcaagccggtg 25829365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 391
Target Start/End: Complemental strand, 40930972 - 40930837
Alignment:
Q  259 cttttgtttaggggtagtttttaaggggtttttattcgagccg----gtgcggcaaccgatttctccttgtatgnnnnnnnnnnccacccaagcttatta 354  Q
    ||||||||||||||| |||||||||| |||||| |||||||||     || | ||||||||||| |||||| ||          |||||| |||||||||    
T  40930972 cttttgtttaggggtggtttttaaggagtttttgttcgagccgttgtttgtgacaaccgatttccccttgtttg-tatttttttccacccgagcttatta 40930874  T
Q  355 gtgcttcttgcacaggcttattggttattaatatttt 391  Q
    ||||||||||||| ||||| ||||||| |||||||||    
T  40930873 gtgcttcttgcacgggcttgttggttaataatatttt 40930837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 25829323 - 25829272
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatattt 390  Q
    |||||| |||||||||||||||||||||| ||||| ||||||| ||||||||    
T  25829323 ccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattt 25829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 584194 - 584142
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||| ||||||||||||||||||||| || ||||| |||| || |||||||||    
T  584194 ccactcaagcttattagtgcttcttgtacgggcttgttggctaataatatttt 584142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 13959278 - 13959226
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| ||||||||| |||||||||||| ||||| |||| || |||||||||    
T  13959278 ccacccgagcttattattgcttcttgcacgggcttgttggctaataatatttt 13959226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 258 - 391
Target Start/End: Original strand, 41702852 - 41702991
Alignment:
Q  258 tcttttgtttaggggtagtttttaaggggtttttattcgagccg------gtgcggcaaccgatttctccttgtatgnnnnnnnnnnccacccaagctta 351  Q
    |||||||||||||| | ||||||||||||||||| |||||||||      ||||||||||||| ||| |||||||||          |||||||| ||||    
T  41702852 tcttttgtttagggttggtttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgacttccccttgtatgttttttttctccacccaaactta 41702951  T
Q  352 ttagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||||| ||||||| ||||  ||||||  |||||||||    
T  41702952 ttagtgctccttgcacgggctagttggttgataatatttt 41702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 226 - 391
Target Start/End: Complemental strand, 46692025 - 46691852
Alignment:
Q  226 gtatatgcccgcgtcattattcttttggt-tgatcttttgtttaggggtagtttttaaggggtttttattcgagccggtgc------ggcaaccgatttc 318  Q
    ||||||||||||||||||| ||||||||| || || ||| | | ||||| ||||||||||||||||| ||||||||||||       |||||||||||||    
T  46692025 gtatatgcccgcgtcattactcttttggtgtgttcctttttat-ggggtggtttttaaggggtttttgttcgagccggtgtttatgtggcaaccgatttc 46691927  T
Q  319 tccttgtatgnnnnnnnnnnc--cacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
     |||||||||          |  ||||| ||||| |||||||||||||||| ||||| ||||||| |||||||||    
T  46691926 cccttgtatgtattttttttctccacccgagcttgttagtgcttcttgcacgggcttgttggttaataatatttt 46691852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 42598059 - 42598111
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    ||||||||||||||||||||||||||||| || || ||||||| |||||||||    
T  42598059 ccacccaagcttattagtgcttcttgcacgggtttgttggttaataatatttt 42598111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 391
Target Start/End: Complemental strand, 30655796 - 30655605
Alignment:
Q  209 cttgtggtatgtcattcgtatatgcccgcgtcattattcttttgg--ttgatcttttgtttaggggtagttttt-aaggggtttttattcgagccg---- 301  Q
    |||||||  ||||||| ||||||||| ||||||||| ||||||||  ||| ||||| ||| |||||| |||||| ||| ||||||| |||||| ||        
T  30655796 cttgtggattgtcatttgtatatgccggcgtcattactcttttgggtttgctcttt-gttgaggggtggttttttaagaggtttttgttcgagtcgatat 30655698  T
Q  302 ---gtgcggcaaccgatttctccttgtatgnnnnnnnnnnccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
       ||| ||||||||||||| |||||| ||          |||||| ||||||||||||| |||||||| ||||| ||||||| |||||||||    
T  30655697 tttgtgtggcaaccgatttccccttgtttgtattttttttccacccgagcttattagtgcgtcttgcacgggcttgttggttaataatatttt 30655605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 1039122 - 1039070
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| |||||||||||||||||||||| ||||| | ||||| |||||||||    
T  1039122 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 1039070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 31424831 - 31424779
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    ||||||||||||||||||| ||||||||| || || ||||||| |||||||||    
T  31424831 ccacccaagcttattagtgtttcttgcacgggtttgttggttaataatatttt 31424779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 36615862 - 36615810
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| |||||||||||||||||||||| ||||| |||| || |||||||||    
T  36615862 ccacccgagcttattagtgcttcttgcacgggcttgttgggtaataatatttt 36615810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 33320774 - 33320825
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatattt 390  Q
    |||||| |||||||||||||||||||||| ||||| |||||||  |||||||    
T  33320774 ccacccgagcttattagtgcttcttgcacgggcttgttggttaacaatattt 33320825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 43397719 - 43397768
Alignment:
Q  340 cacccaagcttattagtgcttcttgcacaggcttattggttattaatattt 390  Q
    ||||||||||| |||||||||||||||| || |||||||||| ||||||||    
T  43397719 cacccaagctt-ttagtgcttcttgcacgggtttattggttaataatattt 43397768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 41419693 - 41419745
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| ||||||||||||| |||||||| ||||| ||||||| |||||||||    
T  41419693 ccacccgagcttattagtgcatcttgcacgggcttgttggttaataatatttt 41419745  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 38908743 - 38908794
Alignment:
Q  340 cacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    ||||| ||||||||||||| |||||||| | ||||||||||| |||||||||    
T  38908743 cacccgagcttattagtgcatcttgcacggccttattggttaataatatttt 38908794  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 22649122 - 22649072
Alignment:
Q  341 acccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||||||||||||| |||||||||| ||||| ||||||| ||| |||||    
T  22649122 acccaagcttattagtacttcttgcacgggcttgttggttaataaaatttt 22649072  T

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Target: scaffold0209 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 12954 - 12902
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||| ||||||||||||||||||||| || ||||| |||| || |||||||||    
T  12954 ccactcaagcttattagtgcttcttgtacgggcttgttggctaataatatttt 12902  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 6575798 - 6575850
Alignment:
Q  339 ccacccaagcttattagtgcttcttgcacaggcttattggttattaatatttt 391  Q
    |||||| | |||||||||||||||||||| ||||| ||| ||| |||||||||    
T  6575798 ccacccgaacttattagtgcttcttgcacgggcttgttgattaataatatttt 6575850  T

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