View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20037_low_6 (Length: 520)

Name: NF20037_low_6
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20037_low_6
NF20037_low_6
[»] chr8 (24 HSPs)
chr8 (18-223)||(3509060-3509265)
chr8 (259-473)||(3509266-3509480)
chr8 (474-520)||(1554356-1554402)
chr8 (474-520)||(12710668-12710714)
chr8 (474-520)||(18726621-18726667)
chr8 (474-520)||(25837934-25837980)
chr8 (474-520)||(35818426-35818472)
chr8 (474-520)||(38364104-38364150)
chr8 (478-520)||(3050032-3050074)
chr8 (474-520)||(10896219-10896265)
chr8 (474-520)||(16313509-16313555)
chr8 (474-520)||(26062167-26062213)
chr8 (474-520)||(32660935-32660981)
chr8 (474-520)||(37392548-37392594)
chr8 (474-520)||(38132739-38132785)
chr8 (474-520)||(42755890-42755936)
chr8 (475-520)||(26601941-26601986)
chr8 (474-519)||(41228716-41228761)
chr8 (476-520)||(7931262-7931306)
chr8 (477-520)||(40197081-40197124)
chr8 (473-513)||(8635664-8635704)
chr8 (473-520)||(5020491-5020538)
chr8 (477-520)||(18298135-18298178)
chr8 (474-520)||(33444628-33444674)
[»] chr7 (31 HSPs)
chr7 (469-520)||(43949268-43949319)
chr7 (474-520)||(8419591-8419637)
chr7 (474-520)||(9814220-9814266)
chr7 (474-520)||(11330016-11330062)
chr7 (474-520)||(27213857-27213903)
chr7 (474-520)||(27248316-27248362)
chr7 (474-520)||(33378865-33378911)
chr7 (474-520)||(39554206-39554252)
chr7 (474-520)||(48160593-48160639)
chr7 (474-520)||(48314145-48314191)
chr7 (475-520)||(48341385-48341430)
chr7 (477-520)||(25924642-25924685)
chr7 (474-520)||(27419226-27419272)
chr7 (474-520)||(35488191-35488237)
chr7 (474-520)||(38544217-38544263)
chr7 (474-520)||(40212912-40212958)
chr7 (474-520)||(45045649-45045695)
chr7 (474-520)||(45265050-45265096)
chr7 (476-520)||(38396370-38396414)
chr7 (474-520)||(9946992-9947038)
chr7 (474-520)||(11000726-11000772)
chr7 (474-520)||(28904188-28904234)
chr7 (474-520)||(41632366-41632412)
chr7 (474-520)||(44566068-44566114)
chr7 (474-520)||(45723230-45723276)
chr7 (476-520)||(45448965-45449009)
chr7 (474-520)||(34930467-34930514)
chr7 (474-520)||(16825356-16825402)
chr7 (474-520)||(25098092-25098138)
chr7 (474-520)||(44820277-44820323)
chr7 (474-518)||(45440933-45440977)
[»] chr2 (28 HSPs)
chr2 (473-520)||(37192545-37192592)
chr2 (474-520)||(346347-346393)
chr2 (474-520)||(9733848-9733894)
chr2 (474-520)||(21737402-21737448)
chr2 (474-520)||(34356702-34356748)
chr2 (474-520)||(39995133-39995179)
chr2 (474-520)||(42674663-42674709)
chr2 (474-520)||(2050889-2050935)
chr2 (474-520)||(6171814-6171860)
chr2 (474-520)||(11071628-11071674)
chr2 (474-520)||(14777500-14777546)
chr2 (474-520)||(37533975-37534021)
chr2 (474-520)||(40950861-40950907)
chr2 (476-520)||(28311701-28311745)
chr2 (476-520)||(37233452-37233496)
chr2 (477-520)||(5770115-5770158)
chr2 (477-520)||(26310292-26310335)
chr2 (474-520)||(2521698-2521744)
chr2 (474-520)||(4559582-4559628)
chr2 (474-520)||(17966006-17966052)
chr2 (474-520)||(20426485-20426531)
chr2 (474-520)||(41729132-41729178)
chr2 (474-520)||(41750552-41750598)
chr2 (476-520)||(638616-638660)
chr2 (474-518)||(40570045-40570089)
chr2 (474-520)||(27357965-27358011)
chr2 (475-520)||(13760968-13761013)
chr2 (476-520)||(14832833-14832877)
[»] scaffold0006 (1 HSPs)
scaffold0006 (474-520)||(201948-201994)
[»] chr6 (8 HSPs)
chr6 (474-520)||(1317041-1317087)
chr6 (474-520)||(2657723-2657769)
chr6 (474-520)||(7053572-7053618)
chr6 (474-520)||(8029356-8029402)
chr6 (474-520)||(14171036-14171082)
chr6 (475-516)||(18897948-18897989)
chr6 (474-508)||(10246224-10246258)
chr6 (479-520)||(16968948-16968989)
[»] chr5 (13 HSPs)
chr5 (474-520)||(555708-555754)
chr5 (474-520)||(4765562-4765608)
chr5 (474-520)||(12970532-12970578)
chr5 (474-520)||(19065507-19065553)
chr5 (474-520)||(22935914-22935960)
chr5 (474-520)||(28602578-28602624)
chr5 (476-520)||(6091738-6091782)
chr5 (474-520)||(14206823-14206869)
chr5 (474-520)||(29543017-29543063)
chr5 (473-520)||(32535960-32536007)
chr5 (474-520)||(18412232-18412278)
chr5 (474-520)||(36703897-36703943)
chr5 (475-520)||(11855658-11855703)
[»] chr4 (32 HSPs)
chr4 (474-520)||(6279923-6279969)
chr4 (474-520)||(23686814-23686860)
chr4 (474-520)||(27762901-27762947)
chr4 (474-520)||(39835309-39835355)
chr4 (474-520)||(40435927-40435973)
chr4 (474-520)||(45747798-45747844)
chr4 (474-520)||(48879352-48879398)
chr4 (474-520)||(55968002-55968048)
chr4 (476-520)||(34237424-34237468)
chr4 (474-520)||(936153-936199)
chr4 (474-520)||(25916037-25916083)
chr4 (474-520)||(27555437-27555483)
chr4 (474-520)||(34049599-34049645)
chr4 (474-520)||(35999713-35999759)
chr4 (474-520)||(39498852-39498898)
chr4 (474-520)||(39502191-39502237)
chr4 (474-520)||(39730295-39730341)
chr4 (474-520)||(41859049-41859095)
chr4 (474-520)||(48518893-48518939)
chr4 (474-518)||(18405236-18405280)
chr4 (476-520)||(27942770-27942814)
chr4 (473-520)||(18931780-18931827)
chr4 (473-520)||(41744221-41744268)
chr4 (474-520)||(13229991-13230037)
chr4 (474-520)||(25932468-25932514)
chr4 (474-520)||(42773975-42774021)
chr4 (474-520)||(43723291-43723337)
chr4 (474-520)||(47670389-47670435)
chr4 (474-520)||(30415929-30415975)
chr4 (474-520)||(32953550-32953596)
chr4 (478-520)||(45596295-45596337)
chr4 (484-520)||(8322272-8322308)
[»] chr3 (18 HSPs)
chr3 (474-520)||(8476310-8476356)
chr3 (474-520)||(9320450-9320496)
chr3 (474-520)||(11239122-11239168)
chr3 (474-520)||(24574598-24574644)
chr3 (474-520)||(26849045-26849091)
chr3 (474-520)||(40908288-40908334)
chr3 (474-520)||(44952331-44952377)
chr3 (471-520)||(1099221-1099270)
chr3 (474-520)||(6231503-6231549)
chr3 (474-520)||(20297816-20297862)
chr3 (474-520)||(28124438-28124484)
chr3 (474-520)||(47114859-47114905)
chr3 (471-520)||(33217912-33217961)
chr3 (475-520)||(48339760-48339805)
chr3 (474-520)||(20414467-20414513)
chr3 (474-520)||(43715310-43715356)
chr3 (474-520)||(31435925-31435971)
chr3 (474-518)||(43132159-43132203)
[»] chr1 (30 HSPs)
chr1 (474-520)||(2430520-2430566)
chr1 (474-520)||(3572567-3572613)
chr1 (474-520)||(5806293-5806339)
chr1 (474-520)||(6978794-6978840)
chr1 (474-520)||(9115861-9115907)
chr1 (474-520)||(25789787-25789833)
chr1 (474-520)||(39329632-39329678)
chr1 (474-520)||(39930481-39930527)
chr1 (474-520)||(46666732-46666778)
chr1 (474-520)||(47037481-47037527)
chr1 (475-520)||(36361806-36361851)
chr1 (475-520)||(51445083-51445128)
chr1 (474-518)||(2632878-2632922)
chr1 (476-520)||(38964683-38964727)
chr1 (474-520)||(1597344-1597390)
chr1 (474-520)||(6911517-6911563)
chr1 (474-520)||(8332038-8332084)
chr1 (474-520)||(9831872-9831918)
chr1 (474-520)||(20260088-20260134)
chr1 (474-520)||(35187480-35187526)
chr1 (474-520)||(49822919-49822965)
chr1 (474-520)||(52630797-52630843)
chr1 (474-518)||(14788749-14788793)
chr1 (474-520)||(1007771-1007817)
chr1 (474-520)||(5518506-5518552)
chr1 (474-520)||(12190179-12190225)
chr1 (154-256)||(18233382-18233484)
chr1 (474-520)||(32202333-32202379)
chr1 (472-518)||(32824948-32824994)
chr1 (479-520)||(11014448-11014489)
[»] scaffold0189 (1 HSPs)
scaffold0189 (477-520)||(28957-29000)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 3509060 - 3509265
Alignment:
Q  18 gtctgaagaacaatggtattgtccaaatgttttgaccctaggagtttgaattggatgacacctgactatttgtacaagtgtacaagtcagtatctactaa 117  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3509060 gtctgaagaacaatgatattgtccaaatgtttttaccctaggagtttgaattggatgacacctgactatttgtacaagtgtacaagtcagtatctactaa 3509159  T
Q  118 atcgtataagtccttcaaagagtttttgtatgaattctacctcatctctcaatgggtatattcttcaagtaatatttttatgaccttaactctttttaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3509160 atcgtataagtccttcaaagagtttttgtatgaattctacctcatctctcaatgggtatattcttcaagtaatatttatatgaccttaactctttttaaa 3509259  T
Q  218 gagttg 223  Q
    ||||||    
T  3509260 gagttg 3509265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 259 - 473
Target Start/End: Original strand, 3509266 - 3509480
Alignment:
Q  259 atgttgaatatgaacttcaacgtccatatttgaagttcctaaagctacaattgagagcatctgatcttagagaacaaattgtgttttgtgatcaatacaa 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3509266 atgttgaatatgaacttcaacgtccatatttgaagttcctaaagctacaattgagagcatctgatcttagagaacaaattgtgttttgtgatcaatacaa 3509365  T
Q  359 gttgtgttgaccaccaatcaagatcaagagccaaatgnnnnnnnattaatggctatttgatataggagaatgaaaatgtgtgatacaagtttgtaaaatc 458  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3509366 gttgtgttgaccaccaatcaagatcaagagccaaatgtttttttattaatggctatttgatataggagaatgaaaatgtgtgatacaagtttgtaaaatc 3509465  T
Q  459 tatttataaccttaa 473  Q
    |||||||||||||||    
T  3509466 tatttataaccttaa 3509480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 1554356 - 1554402
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  1554356 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 1554402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 12710714 - 12710668
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  12710714 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 12710668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 18726621 - 18726667
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  18726621 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 18726667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 25837980 - 25837934
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  25837980 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 25837934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 35818426 - 35818472
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  35818426 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 35818472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 38364150 - 38364104
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  38364150 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 38364104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 3050074 - 3050032
Alignment:
Q  478 gtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  3050074 gtttgtttcaagttataattgttgattcccgggaataaaatga 3050032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 10896219 - 10896265
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  10896219 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatga 10896265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 16313509 - 16313555
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  16313509 gtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 16313555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 26062213 - 26062167
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  26062213 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 26062167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 32660935 - 32660981
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  32660935 gtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 32660981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 37392548 - 37392594
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||    
T  37392548 gtgtatttgtttcaagttataattgttgattcccgggaataaaatga 37392594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 38132739 - 38132785
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  38132739 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 38132785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 42755936 - 42755890
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  42755936 gtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 42755890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 475 - 520
Target Start/End: Original strand, 26601941 - 26601986
Alignment:
Q  475 tgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  26601941 tgtgtttgtttcaaattataattgttgattcccgggaataaaatga 26601986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 474 - 519
Target Start/End: Original strand, 41228716 - 41228761
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatg 519  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||    
T  41228716 gtgtgtttgtttcaagttataattgttaattcccgggaataaaatg 41228761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 7931306 - 7931262
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  7931306 gtgtttgtttcaagttataattgttgattcctgggaataaaatga 7931262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 520
Target Start/End: Original strand, 40197081 - 40197124
Alignment:
Q  477 tgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  40197081 tgtttgtttcaagttataattgttgattcccggaaataaaatga 40197124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 513
Target Start/End: Complemental strand, 8635704 - 8635664
Alignment:
Q  473 agtgtgtttgtttcaagttataaatgttgattcccgggaat 513  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  8635704 agtgtgtttgtttcaagttataattgttgattcccaggaat 8635664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 5020491 - 5020538
Alignment:
Q  473 agtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||||||  |||||||||  |||||||||||||    
T  5020491 agtgtgtttgtttcaagttatatttgttgattcatgggaataaaatga 5020538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 520
Target Start/End: Complemental strand, 18298178 - 18298135
Alignment:
Q  477 tgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||    
T  18298178 tgtttgtttcaagttataatttttgattctcgggaataaaatga 18298135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 33444628 - 33444674
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||  |||||||||| | |||||||||||    
T  33444628 gtgtgtttgtttcaagttatatttgttgattcctgagaataaaatga 33444674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 43949319 - 43949268
Alignment:
Q  469 cttaagtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  43949319 cttaggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 43949268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 8419591 - 8419637
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  8419591 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 8419637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 9814220 - 9814266
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  9814220 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 9814266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 11330062 - 11330016
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  11330062 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 11330016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 27213857 - 27213903
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  27213857 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 27213903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 27248362 - 27248316
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  27248362 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 27248316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 33378911 - 33378865
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  33378911 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 33378865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 39554252 - 39554206
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  39554252 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 39554206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 48160593 - 48160639
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  48160593 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 48160639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 48314191 - 48314145
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  48314191 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 48314145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 520
Target Start/End: Complemental strand, 48341430 - 48341385
Alignment:
Q  475 tgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  48341430 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 48341385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 520
Target Start/End: Original strand, 25924642 - 25924685
Alignment:
Q  477 tgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  25924642 tgtttgtttcaagttataattgttgattcccgggaataaaatga 25924685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 27419226 - 27419272
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  27419226 gtgtgtttgtttcaagttataattgctgattcccgggaataaaatga 27419272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 35488191 - 35488237
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  35488191 gtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 35488237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 38544263 - 38544217
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38544263 gtgtgtttgtttcaagttataattgttgattcccggaaataaaatga 38544217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 40212958 - 40212912
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  40212958 gtgtgtttgtttcaagttataattgttgattcgcgggaataaaatga 40212912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 45045695 - 45045649
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  45045695 gtgtgtttgttttaagttataattgttgattcccgggaataaaatga 45045649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 45265050 - 45265096
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  45265050 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 45265096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 520
Target Start/End: Original strand, 38396370 - 38396414
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  38396370 gtgtttgttccaagttataattgttgattcccgggaataaaatga 38396414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 9946992 - 9947038
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||    
T  9946992 gtgtgtttgtttaaagttataatttttgattcccgggaataaaatga 9947038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 11000772 - 11000726
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||||    
T  11000772 gtgtgtttgtttcaagttatatatgttgattcctggaaataaaatga 11000726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 28904188 - 28904234
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||||    
T  28904188 gtgtgtttgttttaagttataattgttgattcccgagaataaaatga 28904234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 41632366 - 41632412
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||| | |||||||||||    
T  41632366 gtgtgtttgtttcaagttataattgttgattcctgagaataaaatga 41632412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 44566114 - 44566068
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||    
T  44566114 gtgtgtttgtttcaagttataattgttgatttccggaaataaaatga 44566068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 45723276 - 45723230
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||    
T  45723276 gtgtgtttgtttcaagttatatttgttgattcccgagaataaaatga 45723230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 45449009 - 45448965
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||    
T  45449009 gtgtttgtttcaagttataatttttgattctcgggaataaaatga 45448965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 34930467 - 34930514
Alignment:
Q  474 gtgtgtttgtttcaa-gttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||    
T  34930467 gtgtgtttgtttcaaagttataattgttgattcctgggaataaaatga 34930514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 16825356 - 16825402
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||| |||||  ||||||||||||    
T  16825356 gtgtgtttgtttcaagttataattgttaattcctaggaataaaatga 16825402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 25098138 - 25098092
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| | ||||||  ||||||||||||||    
T  25098138 gtgtgtttgtttcaagttataatttttgattttcgggaataaaatga 25098092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 44820323 - 44820277
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||  | ||||||||||||    
T  44820323 gtgtgtttgtttcaagttataattgttgattttcaggaataaaatga 44820277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 45440977 - 45440933
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaat 518  Q
    |||||||||||||||||||||| ||| |||||  |||||||||||    
T  45440977 gtgtgtttgtttcaagttataattgtagattcttgggaataaaat 45440933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 37192592 - 37192545
Alignment:
Q  473 agtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37192592 agtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 37192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 346347 - 346393
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  346347 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 346393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 9733848 - 9733894
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  9733848 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 9733894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 21737402 - 21737448
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  21737402 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 21737448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 34356702 - 34356748
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  34356702 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 34356748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 39995133 - 39995179
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  39995133 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 39995179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 42674663 - 42674709
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  42674663 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 42674709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 2050935 - 2050889
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
T  2050935 gtgtgtttgtttcaagttataattgttgattcccgagaataaaatga 2050889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 6171860 - 6171814
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
T  6171860 gtgtgtttgtttcaagttataattgttgattcccgagaataaaatga 6171814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 11071674 - 11071628
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  11071674 gtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 11071628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 14777500 - 14777546
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  14777500 gtgtgtttgtttcaatttataattgttgattcccgggaataaaatga 14777546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 37534021 - 37533975
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  37534021 gtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 37533975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 40950861 - 40950907
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  40950861 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 40950907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 520
Target Start/End: Original strand, 28311701 - 28311745
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  28311701 gtgtttgtttcaagttatatttgttgattcccgggaataaaatga 28311745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 37233496 - 37233452
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  37233496 gtgtttgtttcaagttatatttgttgattcccgggaataaaatga 37233452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 520
Target Start/End: Original strand, 5770115 - 5770158
Alignment:
Q  477 tgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||| |||||||||| |||||||||||||    
T  5770115 tgtttgtttcaagttataattgttgattcctgggaataaaatga 5770158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 520
Target Start/End: Complemental strand, 26310335 - 26310292
Alignment:
Q  477 tgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  26310335 tgtttgtttaaagttataattgttgattcccgggaataaaatga 26310292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 2521744 - 2521698
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||    
T  2521744 gtgtgtttgtttcaagttataattgttgattcccgaaaataaaatga 2521698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 4559628 - 4559582
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||||  |||||||||||    
T  4559628 gtgtgtttgtttcaagttataattgttgattcccaagaataaaatga 4559582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 17966052 - 17966006
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||    
T  17966052 gtgtgtttgtttcaagttataattgttgattcccgataataaaatga 17966006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 20426485 - 20426531
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||    
T  20426485 gtgtgtttgtttcaaattatatttgttgattcccgggaataaaatga 20426531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 41729132 - 41729178
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| | || |||||||||||||||||||    
T  41729132 gtgtgtttgtttcaagttataattttttattcccgggaataaaatga 41729178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 41750598 - 41750552
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||    
T  41750598 gtgtgtttgtttcaagttataattgttgattcctaggaataaaatga 41750552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 638660 - 638616
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||    
T  638660 gtgtttgtttcaagttataattgttgatttccggaaataaaatga 638616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 40570089 - 40570045
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaat 518  Q
    |||||||||||||||||||||| ||| |||||| |||||||||||    
T  40570089 gtgtgtttgtttcaagttataattgtagattcctgggaataaaat 40570045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 27357965 - 27358011
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||  ||||||||||| || |||||||||    
T  27357965 gtgtgtttgtttcaagttatatttgttgattcccaggtataaaatga 27358011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 520
Target Start/End: Complemental strand, 13761013 - 13760968
Alignment:
Q  475 tgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||||| | ||||||  ||||||||||||||    
T  13761013 tgtgtttgtttcaagttataattattgattttcgggaataaaatga 13760968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 14832877 - 14832833
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||  ||||||||||  ||||||||||||    
T  14832877 gtgtttgtttcaagttatatttgttgattcctaggaataaaatga 14832833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 201994 - 201948
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  201994 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 201948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 1317087 - 1317041
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  1317087 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 1317041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 2657769 - 2657723
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  2657769 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 2657723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 7053572 - 7053618
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  7053572 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 7053618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 8029402 - 8029356
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  8029402 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 8029356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 14171082 - 14171036
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||    
T  14171082 gtgtgtttgtttcaagttataatttttgattcccgggaataaaatga 14171036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 516
Target Start/End: Complemental strand, 18897989 - 18897948
Alignment:
Q  475 tgtgtttgtttcaagttataaatgttgattcccgggaataaa 516  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  18897989 tgtgtttgtttcaagttataattgttgattcccggaaataaa 18897948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 508
Target Start/End: Original strand, 10246224 - 10246258
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccg 508  Q
    |||||||||||||||||||||| ||||||||||||    
T  10246224 gtgtgtttgtttcaagttataattgttgattcccg 10246258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 520
Target Start/End: Complemental strand, 16968989 - 16968948
Alignment:
Q  479 tttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||| |||||||||| | |||||||||||    
T  16968989 tttgtttcaagttataattgttgattcctgagaataaaatga 16968948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 555708 - 555754
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  555708 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 555754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 4765562 - 4765608
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  4765562 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 4765608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 12970532 - 12970578
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  12970532 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 12970578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 19065507 - 19065553
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  19065507 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 19065553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 22935914 - 22935960
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  22935914 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 22935960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 28602624 - 28602578
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  28602624 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 28602578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 6091782 - 6091738
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  6091782 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 6091738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 14206823 - 14206869
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  14206823 gtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 14206869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 29543017 - 29543063
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  29543017 gtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 29543063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 32536007 - 32535960
Alignment:
Q  473 agtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  32536007 agtgtgtttgttttaagttataattgttgattcccaggaataaaatga 32535960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 18412278 - 18412232
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| | |||||||| |||||||||||||    
T  18412278 gtgtgtttgtttcaagttataattattgattcctgggaataaaatga 18412232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 36703943 - 36703897
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||    
T  36703943 gtgtgtttgtttcaagttataattgttgattatcgggaataaaatga 36703897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 520
Target Start/End: Original strand, 11855658 - 11855703
Alignment:
Q  475 tgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||    
T  11855658 tgtgtttgtttcaagttataattgttgattcctgagaataaaatga 11855703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 6279923 - 6279969
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  6279923 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 6279969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 23686860 - 23686814
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  23686860 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 23686814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 27762901 - 27762947
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  27762901 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 27762947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 39835309 - 39835355
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  39835309 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 39835355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 40435973 - 40435927
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  40435973 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 40435927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 45747798 - 45747844
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  45747798 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 45747844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 48879398 - 48879352
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  48879398 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 48879352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 55968002 - 55968048
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  55968002 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 55968048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 476 - 520
Target Start/End: Original strand, 34237424 - 34237468
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  34237424 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 34237468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 936199 - 936153
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
T  936199 gtgtgtttgtttcaagttataattgttgattcccgagaataaaatga 936153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 25916037 - 25916083
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||    
T  25916037 gtgtgtttgtttcaagttataatttttgattcccgggaataaaatga 25916083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 27555483 - 27555437
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  27555483 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 27555437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 34049599 - 34049645
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  34049599 gtgtgtttgtttcaagttataattgttgattcccggaaataaaatga 34049645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 35999759 - 35999713
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  35999759 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 35999713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 39498898 - 39498852
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  39498898 gtgtgtttgtttcaagttataattgttgattcccggaaataaaatga 39498852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 39502237 - 39502191
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  39502237 gtgtgtttgtttcaagttataattgttgattcccggaaataaaatga 39502191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 39730295 - 39730341
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||    
T  39730295 gtgtgtttgtttcaagttataatttttgattcccgggaataaaatga 39730341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 41859049 - 41859095
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  41859049 gtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 41859095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 48518893 - 48518939
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||    
T  48518893 gtgtgtttgtttcaagttataatttttgattcccgggaataaaatga 48518939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 18405236 - 18405280
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaat 518  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  18405236 gtgtgtttgtttcaagttataattgttgattcccgagaataaaat 18405280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 27942814 - 27942770
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  27942814 gtgtttgtttcaagttataattgttgattcccggaaataaaatga 27942770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 18931827 - 18931780
Alignment:
Q  473 agtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||||||| |||||||| | |||||||||||||    
T  18931827 agtgtgtttgtttcaagttataattgttgatttctgggaataaaatga 18931780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 41744221 - 41744268
Alignment:
Q  473 agtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  41744221 agtgtgtttatttcaagttataattgttgatttccgggaataaaatga 41744268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 13229991 - 13230037
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| | || |||||||||||||||||||    
T  13229991 gtgtgtttgtttcaagttataattttttattcccgggaataaaatga 13230037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 25932514 - 25932468
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||    
T  25932514 gtgtgtttgtttcaagttataattgttgattcctaggaataaaatga 25932468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 42774021 - 42773975
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| | |||||||||||||    
T  42774021 gtgtgtttgtttcaagttataattgttgatttctgggaataaaatga 42773975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 43723337 - 43723291
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||    
T  43723337 gtgtgtttgtttcaagttataattgttgattcccgaaaataaaatga 43723291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 47670435 - 47670389
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||| || ||||||||||    
T  47670435 gtgtgtttgtttcaagttataattgttgattcctggaaataaaatga 47670389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 30415975 - 30415929
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||  ||||||||||||  ||||||||||    
T  30415975 gtgtgtttgtttcaagttatatttgttgattcccgataataaaatga 30415929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 32953596 - 32953550
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||| ||||||||||| ||||||||||| |||| |||||||    
T  32953596 gtgtgtttgtctcaagttataattgttgattcccaggaacaaaatga 32953550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 45596337 - 45596295
Alignment:
Q  478 gtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||| ||||||||  ||||||||||||||    
T  45596337 gtttgtttcaagttataattgttgattttcgggaataaaatga 45596295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 8322308 - 8322272
Alignment:
Q  484 ttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||| |||||||||| |||||||||||||    
T  8322308 ttcaagttataattgttgattcctgggaataaaatga 8322272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 8476310 - 8476356
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  8476310 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 8476356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 9320450 - 9320496
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  9320450 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 9320496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 11239122 - 11239168
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  11239122 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 11239168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 24574644 - 24574598
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  24574644 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 24574598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 26849091 - 26849045
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  26849091 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 26849045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 40908334 - 40908288
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  40908334 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 40908288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 44952377 - 44952331
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  44952377 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 44952331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 1099270 - 1099221
Alignment:
Q  471 taagtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  1099270 taagtgtgtttgttttaagttataattgttgattcccgggaataaaatga 1099221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 6231503 - 6231549
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
T  6231503 gtgtgtttgtttcaagttataattgttgattcccgagaataaaatga 6231549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 20297862 - 20297816
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  20297862 gtgtgtttgtttcaagttataattgttgattcccggaaataaaatga 20297816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 28124438 - 28124484
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  28124438 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 28124484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 47114859 - 47114905
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  47114859 gtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 47114905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 33217912 - 33217961
Alignment:
Q  471 taagtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||||    
T  33217912 taagggtgtttgtttcaagttataattgttgatttccgggaataaaatga 33217961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 475 - 520
Target Start/End: Original strand, 48339760 - 48339805
Alignment:
Q  475 tgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||    
T  48339760 tgtgtttgtttcaagttataattgttgatttccgggaataaaatga 48339805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 20414467 - 20414513
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| | |||||||||||||    
T  20414467 gtgtgtttgtttcaagttataattgttgatttctgggaataaaatga 20414513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 43715310 - 43715356
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||    
T  43715310 gtgtgtttgtttcaagttataattgttgattcccgaaaataaaatga 43715356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 31435925 - 31435971
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||  |||||||||| | |||||||||||    
T  31435925 gtgtgtttgtttcaagttatatttgttgattcctgagaataaaatga 31435971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 43132159 - 43132203
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaat 518  Q
    |||||||||||||||||||||  ||||||||| || |||||||||    
T  43132159 gtgtgtttgtttcaagttatatttgttgattctcgagaataaaat 43132203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 2430566 - 2430520
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  2430566 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 2430520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 3572567 - 3572613
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  3572567 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 3572613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 5806293 - 5806339
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  5806293 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 5806339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 6978840 - 6978794
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  6978840 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 6978794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 9115907 - 9115861
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  9115907 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 9115861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 25789833 - 25789787
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  25789833 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 25789787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 39329678 - 39329632
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  39329678 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 39329632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 39930527 - 39930481
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  39930527 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 39930481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 46666778 - 46666732
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  46666778 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 46666732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 47037527 - 47037481
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  47037527 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 47037481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 520
Target Start/End: Complemental strand, 36361851 - 36361806
Alignment:
Q  475 tgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  36361851 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 36361806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 520
Target Start/End: Original strand, 51445083 - 51445128
Alignment:
Q  475 tgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  51445083 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 51445128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 2632922 - 2632878
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaat 518  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  2632922 gtgtgtttgtttcaagttataattgttgattcccgggaataaaat 2632878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 476 - 520
Target Start/End: Original strand, 38964683 - 38964727
Alignment:
Q  476 gtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  38964683 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 38964727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 1597344 - 1597390
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  1597344 gtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 1597390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 6911563 - 6911517
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  6911563 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 6911517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 8332084 - 8332038
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  8332084 gtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 8332038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 9831872 - 9831918
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  9831872 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatga 9831918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 20260088 - 20260134
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  20260088 gtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 20260134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 35187526 - 35187480
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||    
T  35187526 gtgtgtttttttcaagttataattgttgattcccgggaataaaatga 35187480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 49822919 - 49822965
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  49822919 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 49822965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 52630843 - 52630797
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  52630843 gtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 52630797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 14788793 - 14788749
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaat 518  Q
    |||||||||||||||||||||| | ||||||||||||||||||||    
T  14788793 gtgtgtttgtttcaagttataatttttgattcccgggaataaaat 14788749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 1007817 - 1007771
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||    
T  1007817 gtgtgtttgtttcaagttatatttgttgattcccgagaataaaatga 1007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 5518506 - 5518552
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  5518506 gtgtgtttgtttcaagttatatttgttgattcccaggaataaaatga 5518552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 12190179 - 12190225
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||    
T  12190179 gtgtgtttgtttcaagttataattgttgattttcgggaataaaatga 12190225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 18233382 - 18233484
Alignment:
Q  154 ctacctcatctctcaatgggtatattcttcaagtaatatttttatgaccttaactctttttaaagagttgttaaaacatgtcaaatactcatgactaaga 253  Q
    ||||||||||||||||    ||||||||| ||||| ||||| ||| | ||||||||| ||| |||||||| | ||| |||||||||| |||||  |||||    
T  18233382 ctacctcatctctcaacaactatattctttaagtagtatttatataaacttaactctctttgaagagttgctgaaatatgtcaaatattcatgtttaaga 18233481  T
Q  254 agc 256  Q
    |||    
T  18233482 agc 18233484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 32202333 - 32202379
Alignment:
Q  474 gtgtgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||    
T  32202333 gtgtgtttgtttcaagttataattgttgattcccgaaaataaaatga 32202379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 32824994 - 32824948
Alignment:
Q  472 aagtgtgtttgtttcaagttataaatgttgattcccgggaataaaat 518  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||    
T  32824994 aagtgtgtttgtttcaagttataattgttgatttccggaaataaaat 32824948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 520
Target Start/End: Original strand, 11014448 - 11014489
Alignment:
Q  479 tttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    |||||||||||||||| |||| |||||| |||||||||||||    
T  11014448 tttgtttcaagttatatatgtagattcctgggaataaaatga 11014489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 520
Target Start/End: Original strand, 28957 - 29000
Alignment:
Q  477 tgtttgtttcaagttataaatgttgattcccgggaataaaatga 520  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||    
T  28957 tgtttgtttcaagttataattgttgattttcgggaataaaatga 29000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University