View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20037_low_7 (Length: 463)

Name: NF20037_low_7
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20037_low_7
NF20037_low_7
[»] chr4 (4 HSPs)
chr4 (47-257)||(21174177-21174384)
chr4 (279-448)||(21174450-21174619)
chr4 (374-448)||(40254002-40254076)
chr4 (386-442)||(31941907-31941963)
[»] chr2 (1 HSPs)
chr2 (373-444)||(40819439-40819510)
[»] chr1 (2 HSPs)
chr1 (385-441)||(45594286-45594342)
chr1 (374-448)||(4686089-4686163)
[»] chr8 (1 HSPs)
chr8 (396-441)||(39916901-39916946)
[»] chr5 (1 HSPs)
chr5 (368-441)||(5113852-5113925)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 47 - 257
Target Start/End: Original strand, 21174177 - 21174384
Alignment:
Q  47 caattttctttttattttataaaaatcttgtacctttttcaagattatagcttcaacttatttgaaccaagaattagagttaaaaataagannnnnnnag 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||       ||    
T  21174177 caattttctttttattttataaaaatcttgtacctttttcaagattatagcttcaacttatttgaaccaagaat---agttaaaaataagatttttttag 21174273  T
Q  147 aaaaatgggtgagatgaaaattattattaattaaaatgacactaaatattattttgcatttttctctaactctatgatcccttcaccaaagtgacatctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21174274 aaaaatgggtgagatgaaaattattattaattaaaatgacactaaatattattttacatttttctctaactctatgatcccttcaccaaagtgacatctc 21174373  T
Q  247 atgaacaatag 257  Q
    |||||||||||    
T  21174374 atgaacaatag 21174384  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 279 - 448
Target Start/End: Original strand, 21174450 - 21174619
Alignment:
Q  279 ttaatttaagacatgaaatctgtttgtctgggtagtggaaacctaatcaccttccatgaatataatcatannnnnnnnnnnngatattgatatgtaggtg 378  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||| ||||||||    
T  21174450 ttaatttaagacatgaaatttgtttgtctgggtagtggaaacctaatcaccttccatgaatataatcatattttttatttttgatattgatttgtaggtg 21174549  T
Q  379 gtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacacaaagttg 448  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21174550 gtcaattatagcagctcaattaccaggtaggacagacaatgatatcaagaactattggaacacaaagttg 21174619  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 448
Target Start/End: Complemental strand, 40254076 - 40254002
Alignment:
Q  374 aggtggtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacacaaagttg 448  Q
    |||||||| ||||||||||| ||||| |||||  | || || |||||||| ||||||||||||||||||||||||    
T  40254076 aggtggtccattatagcagcgcaattaccaggacgaacggataatgatataaagaactattggaacacaaagttg 40254002  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 31941907 - 31941963
Alignment:
Q  386 atagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacaca 442  Q
    |||||||||||| | ||| | || ||||||||||| ||||||||||| |||||||||    
T  31941907 atagcagctcaacttccaagaagaacagacaatgaaatcaagaactactggaacaca 31941963  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 444
Target Start/End: Complemental strand, 40819510 - 40819439
Alignment:
Q  373 taggtggtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacacaaa 444  Q
    |||||||||||||||||| |||||||| ||||| || || || ||||||||||| ||||| |||||||||||    
T  40819510 taggtggtcaattatagctgctcaattaccaggaagaactgataatgatatcaaaaactactggaacacaaa 40819439  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 45594342 - 45594286
Alignment:
Q  385 tatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacac 441  Q
    ||||||||||||| | ||||| || ||||||||||| || |||||||||||||||||    
T  45594342 tatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 45594286  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 4686089 - 4686163
Alignment:
Q  374 aggtggtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacacaaagttg 448  Q
    |||||||| || || ||||||||||||||||| || || || ||||| || |||||||||||||| |||| ||||    
T  4686089 aggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttg 4686163  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 39916901 - 39916946
Alignment:
Q  396 aattgccaggtaggacagacaatgatatcaagaactattggaacac 441  Q
    ||||||| || || ||||||||||| ||||||||||||||||||||    
T  39916901 aattgcccggaagaacagacaatgagatcaagaactattggaacac 39916946  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 5113852 - 5113925
Alignment:
Q  368 atatgtaggtggtcaattatagcagctcaattgccaggtaggacagacaatgatatcaagaactattggaacac 441  Q
    |||||||||||||| || |||||||| ||||| |||||  | || || |||||||| |||||||| ||||||||    
T  5113852 atatgtaggtggtctatcatagcagcacaattaccaggacgaacggataatgatataaagaactactggaacac 5113925  T

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