View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_low_8 (Length: 444)
Name: NF20037_low_8
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Original strand, 12407144 - 12407557
Alignment:
| Q |
13 |
aaaatcttatattaaaagatgaagatagtactagataagattaaaaaagccactaaatgtgttatgtctcactggcattgcagtggtatagttgatttaa |
112 |
Q |
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| T |
12407144 |
aaaatcttatattaaaagatgaagatagtactagataagattaaaaaagccactaaatgtgttatgtctcactggcattgcagtggtatagttgatttaa |
12407243 |
T |
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| Q |
113 |
tcagtgatcatatagacctcttcagaagaaatcaagctgccataggtagggatgttatgttaacattgtcttctgaggaaagagatgaaagattgaaatt |
212 |
Q |
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| T |
12407244 |
tcagtgatcatatagacctcttcagaagaaatcaagctgccataggtagggatgttatgttaacattgtcttctgaggaaagagatgaaagattgaaatt |
12407343 |
T |
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| Q |
213 |
ccatctattgaactccaaggagcttcacccagcactaatatctccagagagtgagtacaaggtgtgagtggagtgtccaaatgttatctctgtttagctt |
312 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12407344 |
ccatctgttgaactccaaggagcttcacccagcactaatatctccagagagtgagtacaaggtgtgagtggagtgtccaaatgttatctttgtttagctt |
12407443 |
T |
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| Q |
313 |
ttgaggaatttatacatcctgtaccttacctgatgatttaactttcttcattaggttcttcagcggctaatgagtggagtattagctacggtattaagaa |
412 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12407444 |
ttgaggaatttatacatcttgtaccttacctgatgatttaactttcttcattaggttcttcagcggctaatgagtggagtattagctacggtattaagaa |
12407543 |
T |
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| Q |
413 |
aagaagaagctcaa |
426 |
Q |
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| T |
12407544 |
aagaagaagctcaa |
12407557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 34165113 - 34165261
Alignment:
| Q |
136 |
agaagaaatcaagctgccataggtagggatgttatgttaacattgtcttctgaggaaagagatgaaagattgaaattccatctattgaactccaaggagc |
235 |
Q |
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|||||||||||||| || |||||| || |||||| |||||| ||| | ||||| || ||||| ||||||||||||||| | |||||||| ||||||| |
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| T |
34165113 |
agaagaaatcaagcggctataggtgtcgacgttatgaaaacattatctacagaggagagggatgacagattgaaattccatttgttgaactctaaggagc |
34165212 |
T |
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| Q |
236 |
ttcacccagcactaatatctccagagagtgagtacaaggtgtgagtgga |
284 |
Q |
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|||| |||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
34165213 |
ttcatccagcactaagatctcccgagagtgagtacaaggtgtgagtgga |
34165261 |
T |
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