View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20037_low_9 (Length: 419)
Name: NF20037_low_9
Description: NF20037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20037_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Complemental strand, 35157237 - 35156843
Alignment:
| Q |
11 |
taattctgaactgtctcatatcctaaatcaaatattagtccttattttacgtccatacaattctctctcttctttcaataatataaaaaatgttgcttag |
110 |
Q |
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| T |
35157237 |
taattctgaactgtctcatatcctaaatcaaatattagtccttattttacgttcatacaattctctctcttctttcaataatataaaaaatgttgcttag |
35157138 |
T |
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| Q |
111 |
gcttaggataatatgattattagtttcatcaaacgaactgattannnnnnn-caaaggaatcaaaccaacttattagaatctcccacaaccgccatagtg |
209 |
Q |
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| T |
35157137 |
gcttaggataatatgattattagtttcatcaaaccaactgattattttttttcaaaggaatcaaaccaacttattagaatctcccacaaccgccatagtg |
35157038 |
T |
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| Q |
210 |
atttgtcggtttgtgtcagctataatacttctcaagttatcatatatttt-cattataaagtctcaatgcttaaattatatatataaaaaacagtggcac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35157037 |
atttgtcggtttgtgtcagctataatacttctcaagttatcatatatttttcattataaagtctcaatgcttaaattatatatataaaaaacagtggcac |
35156938 |
T |
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| Q |
309 |
attttggtctgtggtatagttaattatttgactagaagagaaaagtgttattatattgttgcttgataattgattaataaaataaaggtgataag |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35156937 |
attttggtctgtggtatagttaattatttgactagaagagaaaagtgttattatattgttgcttgataattgattaataaaataaaggtgataag |
35156843 |
T |
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