View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20038_high_10 (Length: 261)
Name: NF20038_high_10
Description: NF20038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20038_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 55371557 - 55371773
Alignment:
| Q |
18 |
gatttgatacacagactcagagtttcttgtgtttatgtaaggagggaaatttcactactcattgtaatggtatgtcaaacaaacacattatcctatttta |
117 |
Q |
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| T |
55371557 |
gatttgatacacagactcagagtttcttgtgtttatgtaaggagggaaatttcactactcattgtaatggtatgtcaaacaaacacattatcctatttta |
55371656 |
T |
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| Q |
118 |
tcttgtgattgtgacttaggaaacaaaacaattattacttttttaatcatgttattggtgcaaagtatcactaattacgacttgaatgattacc--ttta |
215 |
Q |
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| T |
55371657 |
tcttgtgattgtgacttaggaaacaaaacaattattacttttttaatcatgttattggtgcaaagtatc-----tatcgacttggatgattaccttttta |
55371751 |
T |
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| Q |
216 |
gcagcggggtctcgcaacttcg |
237 |
Q |
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| T |
55371752 |
gcagcggggtctcgcaacttcg |
55371773 |
T |
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