View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20038_high_7 (Length: 351)
Name: NF20038_high_7
Description: NF20038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20038_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 30657124 - 30656803
Alignment:
| Q |
14 |
aacctgtgcagggtttgaccattaatttgaggcaaatataaattgagaactatagccaaaaggtaaagacaacacaagaagcaatcgaaaacactatgaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30657124 |
aacctgtgcagggtttgaccattaatttgaggcaaatataaattgagaactatagccaaaaggtaaagacaacacaagaagcaatcgaaaacactatgaa |
30657025 |
T |
|
| Q |
114 |
tcactcttttttccagaacccaaatacggaaatgctgcaagacccttcagaaatttcgttcgactcatttggcattcatgattatccaattcctgattct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30657024 |
tcactcttttttccagaacccaaatacggaaatgctgcaagacccttcagaaatttcgttcgactcatttggcattcatgattatccaattcctgattct |
30656925 |
T |
|
| Q |
214 |
ctttccttcgatatggttgatttctcatatagttcaaatgaaccaacaaaaagtaaatcaatgttgaagtcatcgtctgaagcaaaacaagaacagaata |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
30656924 |
ctttccttcgatatggttgatttctcatatagttcaaatgaaccaacaaaaagtaaatcaatgttgaagtcatcggctgaagcaaaacaagaacataata |
30656825 |
T |
|
| Q |
314 |
ggatggatcagaagccatatat |
335 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30656824 |
ggatggatcagaagccatatat |
30656803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 30690092 - 30690039
Alignment:
| Q |
117 |
ctcttttttccagaacccaaatacggaaatgctgcaagacccttcagaaatttc |
170 |
Q |
| |
|
|||||| ||||| |||||| ||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
30690092 |
ctctttgttccacaacccagatatggaaatgcagcaaggcccttcagaaatttc |
30690039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 30672197 - 30672129
Alignment:
| Q |
117 |
ctcttttttccagaacccaaatacggaaatgctgcaagacccttcagaaatttcgttcgactcatttgg |
185 |
Q |
| |
|
|||||| ||||| |||||| ||| ||||||||||||| |||||| |||||||| || || |||||||| |
|
|
| T |
30672197 |
ctctttgttccacaacccagatatggaaatgctgcaaagcccttctgaaatttcctttgaatcatttgg |
30672129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 30672302 - 30672270
Alignment:
| Q |
24 |
gggtttgaccattaatttgaggcaaatataaat |
56 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
30672302 |
gggtttgaccattattttgaggcaaatataaat |
30672270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University