View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20038_low_12 (Length: 259)
Name: NF20038_low_12
Description: NF20038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20038_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 44756489 - 44756692
Alignment:
| Q |
11 |
gaagaatatcaaagcaagcagcgtagatagagaagttgaaagtgttannnnnnnaaagtagggaagatgatgaagctcaacaagttagaatagtatgtga |
110 |
Q |
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| T |
44756489 |
gaagaaaatcaaagcaagcagcgtagatagagaagttgaaagtgttatttttttaaagtagggaagatg---aagctcaacaagttagaatagtatgtga |
44756585 |
T |
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| Q |
111 |
ctaactaggtaatatagaacttttaatctgagccacttatttaaatctaatgcttgaggtttattcattccatctctttttataactatttctttcattt |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |||||||| |
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| T |
44756586 |
ctaactaggtaaaatagaacttttaatctgagccacttatttaaatctaatgcttgaagtttattcattccatctctctttatatctatttatttcattt |
44756685 |
T |
|
| Q |
211 |
gatacat |
217 |
Q |
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||||||| |
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| T |
44756686 |
gatacat |
44756692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 26194951 - 26195076
Alignment:
| Q |
87 |
tcaacaagttagaatagtatgtgactaactaggtaatatagaacttttaatctgagccacttatttaaatctaatgcttgaggtttattcattccatctc |
186 |
Q |
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||||||| ||||||||||||||||||| | ||| ||||||||||||| ||||| |||||||| || |||| ||||||||||||| | |||||| |
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| T |
26194951 |
tcaacaaattagaatagtatgtgacta----gttaaaatagaacttttaaatcgagccgcttatttatatataatagttgaggtttattcctctcatctc |
26195046 |
T |
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| Q |
187 |
tttttataactatttctttcatttgatacat |
217 |
Q |
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|| |||||| || | || ||||||||||||| |
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| T |
26195047 |
ttattataa-tactactctcatttgatacat |
26195076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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