View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20038_low_13 (Length: 257)
Name: NF20038_low_13
Description: NF20038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20038_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 39460723 - 39460876
Alignment:
| Q |
1 |
aaaaccaacttcgtaaacaattatgtggcatttctcaaccctccccgacgagttaggattatctccattgtaggatcctaaccccttcccaacaccttcc |
100 |
Q |
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| T |
39460723 |
aaaaccaacttcgtaaacaattatgtggcatttctcaaccctccccgacgagttaggattatctccattgtaggatcctaaccccttcccaacaccttcc |
39460822 |
T |
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| Q |
101 |
cattaatggctataaaagttcttctcctcataacacaacaacaaatccaatctc |
154 |
Q |
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| T |
39460823 |
cattaatggctataaaagttcttctcctcataacacaacaacaaatccaatctc |
39460876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 39460912 - 39460963
Alignment:
| Q |
190 |
gagcattattttccttatgtttgagctgaggctgctgcattcttctcctctt |
241 |
Q |
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| T |
39460912 |
gagcattattttccttatgtttgagctgaggctgctgcattcttctcctctt |
39460963 |
T |
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