View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20038_low_17 (Length: 207)
Name: NF20038_low_17
Description: NF20038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20038_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 52033040 - 52033213
Alignment:
| Q |
13 |
attattctataaacaatatacgcatttgaaaaataataaatatataatta---agtatatcaattggtgcatcattttctactggtatattatttctctt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
52033040 |
attattctataaacaatatacgcatttgaaaaataacaaatatataattaattattatatcaattggtgcat-attttctactgg--tattatttctctt |
52033136 |
T |
|
| Q |
110 |
gaaaataggacctaagtttatttatttannnnnnnnnaaggaaatacatgccttaatgttgttaatttggtttggactgt |
189 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033137 |
gaaaataggacctaagttttttttttt---tttttttaaggaaatacatgccttaatgttgttaatttggtttggactgt |
52033213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 8329241 - 8329134
Alignment:
| Q |
13 |
attattctataaacaatatacgcatttgaaaaataataaa-------tatataattaagtatatcaattggtgcatcattttctactggtatattatttc |
105 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||||||| |||||||| ||| ||||| ||||| |
|
|
| T |
8329241 |
attattctataagcaatatacacattttaaaacgaataaaatatttttatataattaagtatatcaattggtgtatcatttttcact--tatatcatttc |
8329144 |
T |
|
| Q |
106 |
tcttgaaaat |
115 |
Q |
| |
|
|||||||||| |
|
|
| T |
8329143 |
tcttgaaaat |
8329134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University